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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20910 and SM_b20911 are separated by 224 nucleotides
SM_b20911 and SM_b20912 are separated by 23 nucleotides
SM_b20912 and SM_b20913 overlap by 19 nucleotides
SM_b20913 and SM_b21682 overlap by 8 nucleotides
SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355
_b20910
SM_b20911: SM_b20911 - hypothetical protein, at 1,319,580 to 1,319,786
_b20911
SM_b20912: SM_b20912 - ATP-dependent DNA ligase, at 1,319,810 to 1,320,904
_b20912
SM_b20913: SM_b20913 - hypothetical protein, at 1,320,886 to 1,321,488
_b20913
SM_b21682: SM_b21682 - hypothetical protein, at 1,321,481 to 1,321,666
_b21682
Group
Condition
SM
_b20910
SM
_b20911
SM
_b20912
SM
_b20913
SM
_b21682
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.5
+0.1
-0.1
-1.2
stress
Chlorite 0.1 mM
-0.2
-0.0
+0.1
-0.7
-0.6
stress
3-octanone 5.310333333 mM
-0.3
-0.4
-0.2
-0.4
+0.2
stress
copper (II) chloride 1 mM
-0.5
+0.1
-0.1
-0.7
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.2
+0.1
-0.8
-0.3
stress
1-octen-3-ol 0.6030326667 mM
-0.3
-0.4
-0.1
-0.3
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.3
-0.3
-0.3
-0.3
+0.3
r2a control
R2A control for volatile experiments
-0.2
-0.2
-0.3
-0.2
+0.3
lb
LB
+0.0
+0.2
-0.0
-0.9
+0.0
r2a control
R2A control
+0.2
+0.2
+0.0
-0.5
-0.5
nitrogen source
nitrate (N)
-0.1
+0.3
-0.3
-0.4
-0.1
r2a control
R2A control for volatile experiments
-0.3
-0.3
-0.1
-0.2
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
-0.5
+0.1
-0.3
+0.3
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.2
-0.5
-0.1
+0.1
+0.3
stress
1-octen-3-ol 0.4933903333 mM
-0.5
-0.1
-0.2
+0.1
+0.5
stress
1-octen-3-ol 0.6030326667 mM
+0.1
-0.5
-0.1
+0.0
+0.4
carbon source
Lactitol (C)
-0.4
+0.2
-0.1
-0.1
+0.3
nitrogen source
L-Arginine (N)
+0.0
-0.0
+0.0
-0.6
+0.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
-0.0
+0.3
-0.6
+0.1
pH
LB, pH6
+0.1
-0.1
-0.1
+0.5
-0.4
nitrogen source
Cytosine (N)
-0.3
+0.2
+0.1
-0.5
+0.5
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.4
+0.0
+0.1
-0.4
-0.2
stress
Cisplatin 0.001 mg/ml
-0.4
-0.1
-0.2
+0.5
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.3
+0.4
-0.1
-0.8
+0.3
nitrogen source
Uridine (N)
-0.1
+0.2
-0.1
+0.7
-0.1
stress
perchlorate 10 mM
+0.3
+0.2
-0.1
+0.7
-0.3
nitrogen source
NAG (N)
+0.2
+0.2
-0.0
-0.1
+0.7
nitrogen source
L-Histidine (N)
-0.4
+0.4
+0.2
+0.7
+0.1
stress
Aluminum chloride
+0.3
+0.1
-0.1
+0.1
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
+0.5
+0.3
+0.4
+0.5
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SM_b20912
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