Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSM_b20890 and SM_b20891 are separated by 58 nucleotidesSM_b20891 and SM_b20892 are separated by 76 nucleotidesSM_b20892 and SM_b20893 are separated by 146 nucleotidesSM_b20893 and SM_b20894 overlap by 1 nucleotides SM_b20890: SM_b20890 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 1,295,635 to 1,297,374 _b20890 SM_b20891: SM_b20891 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data), at 1,297,433 to 1,298,866 _b20891 SM_b20892: SM_b20892 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data), at 1,298,943 to 1,299,938 _b20892 SM_b20893: SM_b20893 - sugar uptake ABC transporter permease, at 1,300,085 to 1,301,299 _b20893 SM_b20894: SM_b20894 - L-arabinose ABC transporter, ATPase component (from data), at 1,301,299 to 1,302,819 _b20894
Group Condition SM_b20890 SM_b20891 SM_b20892 SM_b20893 SM_b20894
carbon source L-Arabinose (C) -5.5 -3.7 -5.0 -2.6 -3.0
carbon source L-Arabinose (C) -4.7 -3.3 -5.7 -2.7 -2.8
carbon source L-Arabinose (C) -4.6 -3.0 -5.6 -2.4 -3.3
carbon source D-Galactose (C) -0.0 -0.1 +0.0 -0.6 -0.5
stress 6-Pentyl-2H-pyran-2-one 0.385649 mM -0.1 +0.2 -0.4 -0.2 -0.4
nitrogen source D-Glucosamine Hydrochloride (N) -0.4 -0.3 +0.2 -0.0 -0.5
carbon source Lactulose (C) -0.0 -0.2 +0.1 -0.4 -0.3
carbon source D-Mannose (C) +0.0 +0.2 +0.0 -0.5 -0.5
carbon source L-Fucose (C) -0.4 -0.3 -0.2 +0.2 +0.1
carbon source D-Glucose (C) +0.3 -0.4 +0.0 -0.2 -0.3
nitrogen source L-Histidine (N) -0.2 -0.4 +0.2 -0.2 -0.1
carbon source D-Mannose (C) +0.2 +0.2 -0.0 -0.5 -0.2
nutrient L-Histidine -0.3 +0.6 -0.0 -0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.0 -0.4 -0.2 +0.4
nutrient Min media with glucose -0.1 +0.5 -0.2 -0.4 -0.1
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.1 +0.1 +0.3 -0.3 -0.3
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.0 -0.5 +0.5 -0.1 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.2 +0.2 +0.0 +0.3
stress copper (II) chloride 1 mM -0.3 +0.4 +0.1 -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.6 +0.2 -0.2 +0.1
nitrogen source nitrate (N) +0.2 +0.4 +0.1 -0.4 -0.0
carbon source Lactitol (C) -0.3 +0.2 +0.2 +0.1 +0.3
carbon source D-Xylose (C) +0.5 +0.6 +0.2 -0.3 -0.3
stress Aluminum chloride +0.1 +0.4 +0.4 +0.1 -0.1
carbon source D-Ribose (C) +0.5 +0.5 +0.0 -0.2 +0.1
carbon source D-Xylose (C) +0.6 +0.6 +0.2 -0.4 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.4 +0.1 +0.1 +0.5
stress Chlorite 0.1 mM +0.3 +0.5 +0.6 -0.1 +0.1
carbon source D-Ribose (C) +0.9 +0.9 +0.4 +0.2 +0.3
carbon source D-Ribose (C) +1.0 +0.9 +0.4 +0.3 +0.5
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