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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20758 and SM_b20759 are separated by 122 nucleotides
SM_b20759 and SM_b20760 overlap by 1 nucleotides
SM_b20760 and SM_b20761 are separated by 4 nucleotides
SM_b20761 and SM_b20762 overlap by 4 nucleotides
SM_b20758: SM_b20758 - ArsR family transcriptional regulator, at 1,551,129 to 1,551,863
_b20758
SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456
_b20759
SM_b20760: SM_b20760 - carbon-phosphorus lyase, at 1,552,456 to 1,553,058
_b20760
SM_b20761: SM_b20761 - carbon-phosphorus lyase, at 1,553,063 to 1,554,169
_b20761
SM_b20762: SM_b20762 - carbon-phosphorus lyase, at 1,554,166 to 1,555,059
_b20762
Group
Condition
SM
_b20758
SM
_b20759
SM
_b20760
SM
_b20761
SM
_b20762
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-3.2
N.D.
-0.2
-0.2
-0.5
stress
copper (II) chloride 1 mM
-2.9
N.D.
+0.1
-0.0
-0.2
r2a control
R2A control for volatile experiments
-2.3
N.D.
-0.3
+0.1
-0.1
pH
LB, pH8
-2.5
N.D.
+0.1
-0.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.7
N.D.
-0.6
+0.2
-0.2
carbon source
D-Leucrose (C)
-1.5
N.D.
-0.7
+0.1
-0.2
pH
LB, pH8
-1.5
N.D.
-0.6
-0.2
+0.1
stress
Nickel (II) chloride 1 mM
-2.0
N.D.
-0.5
+0.3
+0.0
carbon source
acetate (C)
-2.5
N.D.
+0.1
+0.2
+0.1
stress
Chlorite 0.1 mM
-2.8
N.D.
+0.3
+0.4
+0.1
nitrogen source
Gelatin (N)
-2.4
N.D.
+0.1
+0.2
+0.1
stress
1-octen-3-ol 0.6030326667 mM
-1.8
N.D.
-0.0
-0.0
-0.0
carbon source
Lactitol (C)
-1.9
N.D.
+0.0
+0.0
+0.1
lb no stress control
LB no stress control
-1.8
N.D.
-0.1
+0.2
-0.0
stress
copper (II) chloride 1 mM
-2.0
N.D.
-0.3
+0.4
+0.3
nitrogen source
L-Histidine (N)
-1.5
N.D.
+0.2
-0.3
+0.0
pH
LB, pH7
-1.7
N.D.
+0.2
-0.2
+0.2
lb
LB
-1.5
N.D.
-0.1
+0.3
-0.0
lb
LB
-1.6
N.D.
+0.2
+0.0
+0.2
nitrogen source
NAG (N)
-1.2
N.D.
-0.3
+0.3
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-1.5
N.D.
+0.2
+0.1
+0.1
stress
Cobalt chloride 0.16 mM
-1.7
N.D.
+0.6
-0.1
+0.1
stress
Fusidic 0.0001 mg/ml
-1.3
N.D.
+0.2
-0.2
+0.2
nitrogen source
L-Asparagine (N)
-2.0
N.D.
+1.0
+0.3
-0.3
stress
Paraquat dichloride 0.3 mg/ml
-1.6
N.D.
+0.5
+0.2
+0.1
stress
perchlorate 10 mM
-1.5
N.D.
+0.9
-0.2
+0.2
nitrogen source
L-Leucine (N)
-1.3
N.D.
+0.7
+0.2
+0.3
nutrient
Min media with glucose
+1.0
N.D.
-0.7
-0.2
-0.2
stress
Paraquat dichloride 0.2 mg/ml
-1.1
N.D.
+0.9
+0.2
+0.1
nitrogen source
L-Arginine (N)
-0.7
N.D.
+0.9
+0.2
+0.5
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