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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20729 and SM_b20745 are separated by 459 nucleotides
SM_b20745 and SM_b20746 are separated by 563 nucleotides
SM_b20746 and SM_b20747 are separated by 19 nucleotides
SM_b20747 and SM_b20748 are separated by 151 nucleotides
SM_b20729: SM_b20729 - hypothetical protein, at 1,533,003 to 1,533,416
_b20729
SM_b20745: SM_b20745 - glutatmine synthetase II protein, at 1,533,876 to 1,534,910
_b20745
SM_b20746: SM_b20746 - hypothetical protein, at 1,535,474 to 1,535,659
_b20746
SM_b20747: SM_b20747 - hypothetical protein, at 1,535,679 to 1,536,353
_b20747
SM_b20748: SM_b20748 - glycosyltransferase, at 1,536,505 to 1,537,569
_b20748
Group
Condition
SM
_b20729
SM
_b20745
SM
_b20746
SM
_b20747
SM
_b20748
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
-0.3
-2.2
+0.1
+0.1
carbon source
L-Lysine (C)
N.D.
+0.1
-1.9
-0.1
-0.1
carbon source
methyl-beta-D-xylopyranoside (C)
N.D.
-0.0
-1.9
+0.2
-0.1
carbon source
succinate (C)
N.D.
-0.0
-1.4
+0.0
-0.3
nitrogen source
L-Arginine (N)
N.D.
+0.4
-1.7
-0.2
-0.1
carbon source
Maltitol (C)
N.D.
+0.1
-1.6
-0.0
+0.1
carbon source
methyl-beta-D-xylopyranoside (C)
N.D.
+0.2
-2.0
+0.2
+0.1
carbon source
D-Glucose (C)
N.D.
+0.0
-1.5
-0.1
+0.1
carbon source
D-Glucose (C)
N.D.
-0.1
-1.5
+0.1
+0.1
nitrogen source
L-Serine (N)
N.D.
-0.5
-0.6
-0.1
-0.1
stress
Chlorite 0.1 mM
N.D.
+0.2
-0.9
-0.1
-0.5
carbon source
L-Alanine (C)
N.D.
+0.1
-1.1
-0.1
+0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
N.D.
+0.2
-0.9
-0.1
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
-0.1
-0.7
+0.2
-0.3
r2a control
R2A control
N.D.
+0.0
-0.9
-0.2
+0.2
stress
Paraquat dichloride 0.2 mg/ml
N.D.
+0.2
-0.9
+0.1
-0.2
carbon source
D-Glucose (C)
N.D.
+0.2
-1.1
+0.2
+0.0
nitrogen source
NAG (N)
N.D.
-0.5
+0.4
-0.1
-0.3
nitrogen source
L-Leucine (N)
N.D.
-0.7
+1.0
-0.1
-0.1
nitrogen source
nitrate (N)
N.D.
-0.5
+0.8
-0.1
-0.1
stress
copper (II) chloride 1 mM
N.D.
-0.3
+0.7
+0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.5
+0.4
+0.1
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.4
+0.4
+0.1
+0.4
r2a control
R2A control for volatile experiments
N.D.
-0.1
+1.0
-0.0
-0.1
nitrogen source
Uridine (N)
N.D.
-0.3
+1.2
-0.2
-0.0
stress
Thallium(I) acetate 0.001 mg/ml
N.D.
-0.1
+1.1
+0.0
-0.0
stress
nitrate 40 mM
N.D.
+0.2
+1.2
-0.0
-0.1
stress
Sisomicin 0.004 mg/ml
N.D.
+0.3
+1.4
-0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.0
+1.1
-0.1
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
-0.0
+1.6
+0.3
+0.1
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