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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20674 and SM_b20675 are separated by 32 nucleotides
SM_b20675 and SM_b20676 are separated by 25 nucleotides
SM_b20676 and SM_b20677 are separated by 98 nucleotides
SM_b20677 and SM_b20678 are separated by 47 nucleotides
SM_b20674: SM_b20674 - LacI family transcriptional regulator, at 1,476,114 to 1,477,133
_b20674
SM_b20675: SM_b20675 - hypothetical protein, at 1,477,166 to 1,477,741
_b20675
SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687
_b20676
SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277
_b20677
SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593
_b20678
Group
Condition
SM
_b20674
SM
_b20675
SM
_b20676
SM
_b20677
SM
_b20678
stress
Sisomicin 0.004 mg/ml
-0.3
+0.2
-2.7
-0.0
-0.2
stress
Fusidic 0.0001 mg/ml
+0.2
-0.1
-1.6
+0.1
-0.3
stress
Thallium(I) acetate 0.0025 mg/ml
-0.3
-0.1
-0.3
-0.0
-0.8
pH
LB, pH6
-0.0
-0.1
-0.5
-0.5
-0.4
carbon source
L-Fucose (C)
-0.1
-0.2
-0.7
+0.0
-0.4
nitrogen source
L-Asparagine (N)
-0.1
+0.1
+0.2
-0.6
-0.9
lb
LB
+0.1
-0.1
-0.4
-0.7
-0.1
stress
Nickel (II) chloride 1 mM
-0.2
-0.0
-0.2
-0.2
-0.6
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
+0.2
-1.0
-0.0
-0.2
carbon source
L-Arabinose (C)
+0.0
-0.1
-0.4
-0.2
-0.5
nitrogen source
L-Arginine (N)
-0.0
+0.1
-0.2
-0.5
-0.4
carbon source
L-Alanine (C)
-0.3
+0.2
-0.2
+0.2
-0.9
nitrogen source
L-Leucine (N)
+0.2
+0.1
-0.6
-0.3
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-0.3
-0.3
+0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.2
-0.8
-0.1
+0.1
stress
perchlorate 10 mM
+0.1
-0.2
+0.1
-0.5
-0.4
nitrogen source
NAG (N)
+0.1
-0.1
+0.2
-0.4
-0.4
stress
Paraquat dichloride 0.2 mg/ml
-0.1
-0.2
+0.4
-0.5
-0.3
carbon source
Xylobiose (C)
-0.1
+0.0
+0.2
+0.0
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.2
-0.9
+0.3
+0.3
nitrogen source
Cytosine (N)
-0.1
+0.2
-0.0
+0.4
-0.8
stress
1-octen-3-ol 0.5427293333 mM
-0.2
+0.0
-0.5
-0.1
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.3
-0.5
+0.4
-0.3
carbon source
acetate (C)
-0.1
+0.3
-0.7
-0.1
+0.5
stress
Aluminum chloride
-0.1
+0.4
+0.3
-0.2
-0.4
lb no stress control
LB no stress control
-0.1
+0.2
-0.4
+0.2
+0.2
carbon source
5-Aminovaleric (C)
-0.1
+0.3
+0.2
+0.4
-0.1
nitrogen source
Gelatin (N)
+0.3
-0.2
+0.1
-0.1
+0.6
carbon source
D-Ribose (C)
+0.4
+0.1
-0.2
+0.3
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.0
+0.4
+0.4
-0.1
+0.2
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