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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20661 and SM_b20662 are separated by 84 nucleotides
SM_b20662 and SM_b20663 are separated by 1 nucleotides
SM_b20663 and SM_b20664 are separated by 118 nucleotides
SM_b20664 and SM_b20665 are separated by 76 nucleotides
SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438
_b20661
SM_b20662: SM_b20662 - oxidoreductase, at 1,463,523 to 1,464,299
_b20662
SM_b20663: SM_b20663 - hypothetical protein, at 1,464,301 to 1,465,284
_b20663
SM_b20664: SM_b20664 - GntR family transcriptional regulator, at 1,465,403 to 1,466,092
_b20664
SM_b20665: SM_b20665 - partial transposase of insertion sequence ISRm17 protein, at 1,466,169 to 1,466,822
_b20665
Group
Condition
SM
_b20661
SM
_b20662
SM
_b20663
SM
_b20664
SM
_b20665
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-0.4
-0.8
-0.3
-0.6
r2a control
R2A control for volatile experiments
-0.1
+0.3
-0.4
+0.0
-1.7
nitrogen source
nitrate (N)
-0.5
-0.1
-0.2
-0.3
-0.5
stress
Cisplatin 0.001 mg/ml
-0.0
+0.2
+0.2
-0.3
-1.0
carbon source
D-Mannose (C)
-0.3
+0.1
-0.5
+0.2
-0.4
nitrogen source
Cytosine (N)
-0.7
-0.3
-0.6
-0.1
+0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
+0.1
+0.3
-0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.1
+0.5
-0.2
-0.6
carbon source
Mannobiose (C)
-0.4
-0.2
-0.4
+0.0
+0.4
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
-0.2
-0.8
+0.1
+0.4
nitrogen source
Uridine (N)
-0.3
+0.4
+0.2
-0.2
-0.4
stress
copper (II) chloride 1 mM
+0.7
+0.1
+0.2
-0.5
-0.8
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.5
-0.1
-0.4
+0.3
+0.4
stress
D-Cycloserine 0.05 mg/ml
-0.3
+0.3
+0.3
-0.2
-0.3
carbon source
Uridine (C)
-0.1
+0.4
-0.3
+0.2
-0.4
carbon source
Fumarate (C)
+0.3
-0.2
-0.5
+0.2
+0.2
carbon source
L-Arabinose (C)
+0.2
-0.1
-0.4
-0.2
+0.6
carbon source
L-Alanine (C)
-0.2
+0.1
-0.4
+0.4
+0.3
carbon source
L-Lysine (C)
+0.2
+0.3
-0.7
+0.2
+0.1
nitrogen source
L-Arginine (N)
+0.2
-0.2
-0.5
+0.1
+0.6
stress
Paraquat dichloride 0.3 mg/ml
-0.1
+0.1
-0.2
-0.3
+0.7
nitrogen source
L-Glutamine (N)
+0.2
+0.1
+0.4
+0.1
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.1
-0.2
-0.1
+1.0
carbon source
L-Arabinose (C)
+0.2
+0.4
-0.3
+0.2
+0.2
carbon source
pipercolic (C)
-0.2
+0.5
-0.1
+0.5
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.1
+0.6
-0.4
+0.4
carbon source
pipercolic (C)
+0.2
+0.5
-0.5
+0.4
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.5
-0.1
+0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.1
+0.3
+0.1
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.0
-0.2
+0.1
+1.2
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