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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20659 and SM_b20660 are separated by 192 nucleotides
SM_b20660 and SM_b20661 are separated by 134 nucleotides
SM_b20661 and SM_b20662 are separated by 84 nucleotides
SM_b20662 and SM_b20663 are separated by 1 nucleotides
SM_b20659: SM_b20659 - sugar uptake ABC transporter permease, at 1,459,807 to 1,460,739
_b20659
SM_b20660: SM_b20660 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,460,932 to 1,462,236
_b20660
SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438
_b20661
SM_b20662: SM_b20662 - oxidoreductase, at 1,463,523 to 1,464,299
_b20662
SM_b20663: SM_b20663 - hypothetical protein, at 1,464,301 to 1,465,284
_b20663
Group
Condition
SM
_b20659
SM
_b20660
SM
_b20661
SM
_b20662
SM
_b20663
nitrogen source
Cytosine (N)
-0.4
+0.3
-0.7
-0.3
-0.6
carbon source
D-Trehalose (C)
-0.5
-0.1
-0.2
-0.2
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.4
-0.2
-0.4
-0.8
nitrogen source
NAG (N)
-0.6
+0.1
-0.1
-0.3
-0.3
carbon source
Lactitol (C)
-0.1
-0.1
+0.0
-0.2
-0.7
stress
Nickel (II) chloride 1 mM
-0.6
-0.3
-0.2
-0.3
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
+0.1
-0.1
-0.3
-0.6
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.0
-0.1
+0.1
-0.2
-0.8
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
+0.1
-0.5
-0.1
-0.4
nutrient
L-Lysine
-0.6
-0.1
+0.1
-0.1
-0.3
nitrogen source
Gly-DL-Asp (N)
-0.8
+0.4
-0.2
-0.1
-0.2
carbon source
succinate (C)
+0.2
-0.0
-0.2
-0.2
-0.7
nitrogen source
nitrate (N)
-0.2
+0.3
-0.5
-0.1
-0.2
carbon source
Fumarate (C)
+0.0
-0.1
+0.3
-0.2
-0.5
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.3
-0.2
+0.1
-0.3
-0.3
carbon source
Myristic (C)
-0.3
+0.1
-0.1
+0.4
-0.4
carbon source
L-Lysine (C)
-0.2
+0.0
+0.2
+0.3
-0.7
carbon source
5-Aminovaleric (C)
-0.4
+0.0
+0.1
+0.4
-0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.5
-0.0
+0.1
+0.1
-0.6
stress
Chlorite 0.1 mM
+0.7
-0.0
-0.0
-0.6
+0.0
nitrogen source
L-Leucine (N)
+0.1
+0.4
-0.4
-0.1
+0.3
carbon source
L-Fucose (C)
+0.1
-0.2
+0.3
+0.3
-0.3
carbon source
pipercolic (C)
-0.0
+0.1
+0.2
+0.5
-0.5
nitrogen source
Uridine (N)
-0.1
+0.2
-0.3
+0.4
+0.2
stress
copper (II) chloride 1 mM
-0.5
+0.0
+0.7
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.1
+0.7
+0.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.3
+0.5
+0.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.1
+0.5
-0.1
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.3
+0.2
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.0
+0.5
+0.1
+0.3
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