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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20581 and SM_b20582 are separated by 144 nucleotides
SM_b20582 and SM_b20583 are separated by 91 nucleotides
SM_b20583 and SM_b20584 are separated by 172 nucleotides
SM_b20584 and SM_b20585 are separated by 209 nucleotides
SM_b20581: SM_b20581 - 4-hydroxyphenylpyruvate dioxygenase, at 1,594,321 to 1,596,210
_b20581
SM_b20582: SM_b20582 - LysR family transcriptional regulator, at 1,596,355 to 1,597,275
_b20582
SM_b20583: SM_b20583 - 4-hydroxybenzoate 3-monooxygenase, at 1,597,367 to 1,598,539
_b20583
SM_b20584: SM_b20584 - hypothetical protein, at 1,598,712 to 1,599,374
_b20584
SM_b20585: SM_b20585 - gamma-glutamyltranspeptidase, at 1,599,584 to 1,601,329
_b20585
Group
Condition
SM
_b20581
SM
_b20582
SM
_b20583
SM
_b20584
SM
_b20585
carbon source
pipercolic (C)
-0.1
-0.3
-0.1
-0.7
+0.0
r2a control
R2A control for volatile experiments
-0.1
-0.2
-0.2
-0.4
-0.0
stress
copper (II) chloride 1 mM
-0.2
+0.1
-0.0
-0.7
-0.2
stress
A22 0.02 mg/ml
-0.2
-0.3
-0.1
-0.2
-0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
-0.1
-0.1
-0.3
-0.1
carbon source
pipercolic (C)
-0.0
-0.0
+0.1
-1.0
+0.0
carbon source
D-Fructose (C)
+0.1
-0.1
-0.3
-0.4
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.3
-0.6
+0.2
+0.0
carbon source
Methyl beta-D-glucopyranoside (C)
-0.0
-0.5
+0.1
+0.1
-0.1
lb
LB
-0.1
+0.3
-0.1
-0.6
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.2
+0.0
-0.5
-0.1
stress
nitrate 40 mM
-0.0
+0.1
+0.2
-0.5
+0.1
carbon source
Myristic (C)
-0.2
-0.1
+0.1
-0.3
+0.2
stress
perchlorate 10 mM
+0.1
+0.3
-0.4
-0.3
+0.1
carbon source
acetate (C)
+0.1
-0.2
-0.1
+0.3
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.3
-0.1
+0.4
+0.1
-0.1
pH
LB, pH6
-0.2
+0.3
-0.2
+0.2
-0.2
stress
3-octanone 0.456 mM
+0.2
+0.1
+0.2
-0.5
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
-0.1
-0.1
-0.3
+0.6
stress
3-octanone 2.655166667 mM
-0.0
-0.1
+0.2
-0.3
+0.3
pH
LB, pH8
-0.1
+0.4
-0.0
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.4
+0.2
+0.4
+0.0
nitrogen source
L-Asparagine (N)
+0.4
-0.3
+0.1
+0.2
-0.0
pH
LB, pH8
-0.0
+0.3
-0.2
+0.3
-0.0
nitrogen source
Cytosine (N)
+0.2
+0.3
+0.4
-0.4
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
-0.4
+0.5
+0.0
-0.1
carbon source
methyl-beta-D-xylopyranoside (C)
+0.1
-0.2
+0.2
+0.3
+0.2
nitrogen source
L-Arginine (N)
+0.6
-0.3
-0.1
+0.1
+0.3
nitrogen source
Gly-DL-Asp (N)
+0.2
+0.3
-0.1
+0.3
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
+0.4
+0.6
+0.0
+0.3
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