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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b22021 and SM_b20513 are separated by 94 nucleotides
SM_b20513 and SM_b20514 are separated by 399 nucleotides
SM_b20514 and SM_b20515 are separated by 89 nucleotides
SM_b20515 and SM_b20516 are separated by 67 nucleotides
SM_b22021: SM_b22021 - hypothetical protein, at 534,745 to 534,999
_b22021
SM_b20513: SM_b20513 - hypothetical protein, at 535,094 to 536,020
_b20513
SM_b20514: SM_b20514 - protein-glutamate methyltransferase, at 536,420 to 537,637
_b20514
SM_b20515: SM_b20515 - chemotaxis methyltransferase, at 537,727 to 541,212
_b20515
SM_b20516: SM_b20516 - response regulator protein, at 541,280 to 541,606
_b20516
Group
Condition
SM
_b22021
SM
_b20513
SM
_b20514
SM
_b20515
SM
_b20516
nitrogen source
L-Leucine (N)
-0.1
-0.2
+0.1
-0.1
-1.2
stress
Nickel (II) chloride 1 mM
-0.4
+0.4
-0.1
-0.2
-1.1
nutrient
Min media with glucose
-0.0
-0.1
-0.2
-0.0
-0.8
nitrogen source
L-Glutamine (N)
-0.1
-0.5
-0.0
-0.0
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.5
-0.1
-0.0
-1.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.4
-0.1
+0.0
-0.1
-0.4
stress
Paraquat dichloride 0.3 mg/ml
+0.2
+0.1
+0.0
-0.0
-1.3
dmso control
DMSO control
-0.3
+0.2
-0.1
-0.1
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
+0.2
+0.1
+0.0
-0.4
stress
3-octanone 0.456 mM
-0.2
+0.2
-0.1
-0.1
-0.6
stress
Chlorite 0.1 mM
-0.0
+0.1
+0.2
+0.1
-1.1
carbon source
acetate (C)
+0.1
-0.2
+0.0
-0.2
-0.5
stress
nitrate 40 mM
-0.3
+0.2
+0.1
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
-0.5
-0.3
+0.1
+0.6
r2a control
R2A control for volatile experiments
-0.5
+0.2
-0.1
-0.2
+0.2
stress
Aluminum chloride
-0.5
+0.5
+0.1
+0.0
-0.5
nitrogen source
nitrate (N)
-0.5
-0.1
+0.1
-0.1
+0.4
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.3
+0.2
+0.0
-0.1
-0.7
nitrogen source
Cytosine (N)
+0.6
+0.0
-0.0
-0.1
-0.7
stress
D-Cycloserine 0.05 mg/ml
-0.3
+0.6
-0.1
-0.1
-0.3
stress
perchlorate 10 mM
-0.7
+0.8
+0.2
-0.1
-0.4
nutrient
Min media with glucose
-0.3
+0.1
-0.1
-0.1
+0.5
nitrogen source
L-Histidine (N)
-0.1
-0.6
+0.1
+0.2
+0.4
pH
LB, pH8
+0.3
+0.2
+0.2
-0.1
-0.5
stress
Paraquat dichloride 0.2 mg/ml
-0.2
+0.3
-0.0
-0.1
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.3
+0.0
+0.1
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.3
+0.0
-0.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.3
-0.1
+0.1
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.4
+0.0
-0.0
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.3
+0.1
+0.2
+0.6
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