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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20508 and SM_b20509 are separated by 188 nucleotides
SM_b20509 and SM_b20510 are separated by 46 nucleotides
SM_b20510 and SM_b20511 are separated by 30 nucleotides
SM_b20511 and SM_b22021 are separated by 348 nucleotides
SM_b20508: SM_b20508 - sugar ABC transporter substrate-binding protein, at 530,452 to 531,435
_b20508
SM_b20509: SM_b20509 - transcriptional regulator, at 531,624 to 532,391
_b20509
SM_b20510: SM_b20510 - galactonate dehydratase, at 532,438 to 533,586
_b20510
SM_b20511: SM_b20511 - short-chain dehydrogenase, at 533,617 to 534,396
_b20511
SM_b22021: SM_b22021 - hypothetical protein, at 534,745 to 534,999
_b22021
Group
Condition
SM
_b20508
SM
_b20509
SM
_b20510
SM
_b20511
SM
_b22021
nitrogen source
L-Arginine (N)
-0.4
-5.9
-0.1
-0.9
+0.3
stress
Aluminum chloride
-0.3
-5.6
+0.1
-0.2
-0.5
carbon source
L-Lysine (C)
-0.3
-1.9
-0.2
-0.4
-0.2
carbon source
pipercolic (C)
-0.4
-2.2
+0.0
-0.2
-0.1
stress
Sisomicin 0.004 mg/ml
-0.2
-1.9
-0.4
-0.3
+0.1
carbon source
L-Fucose (C)
+0.1
-2.2
-0.1
-0.0
-0.2
carbon source
pipercolic (C)
-0.2
-1.8
-0.1
-0.2
-0.0
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.2
-2.8
+0.1
+0.1
+0.1
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.9
-0.3
-0.4
-0.5
carbon source
L-Lysine (C)
+0.1
-2.3
+0.1
-0.1
-0.0
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
-1.9
+0.1
+0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-1.5
+0.1
-0.1
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
-1.5
+0.1
-0.5
+0.0
nitrogen source
NAG (N)
+0.3
-1.8
+0.2
-0.6
+0.1
carbon source
5-Aminovaleric (C)
-0.2
-1.4
+0.1
-0.2
-0.1
nitrogen source
L-Leucine (N)
-0.1
-1.4
+0.1
-0.2
-0.1
carbon source
L-Histidine (C)
+0.0
-2.0
+0.1
+0.0
+0.1
carbon source
L-Alanine (C)
-0.2
-1.4
+0.1
-0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.8
-0.9
-0.1
-0.1
+0.3
carbon source
Protocatechuic Acid (C)
-0.3
-1.3
-0.1
+0.2
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-1.3
-0.1
+0.4
-0.7
stress
perchlorate 10 mM
+0.0
-0.9
+0.1
+0.3
-0.7
stress
copper (II) chloride 1 mM
+0.3
-1.4
+0.2
+0.2
-0.2
pH
LB, pH8
+0.1
-1.1
+0.2
+0.3
-0.2
carbon source
L-Proline (C)
+0.2
-1.3
+0.1
-0.1
+0.4
nitrogen source
nitrate (N)
+0.1
+1.2
+0.2
-1.0
-0.5
nutrient
Min media with glucose
+0.2
+1.3
-0.0
-0.2
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+1.2
-0.2
+0.2
-0.2
pH
LB, pH6
-0.3
+2.4
-0.0
+0.0
+0.0
pH
LB, pH6
+0.5
+2.8
+0.2
+0.5
-0.2
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