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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20485 and SM_b20486 overlap by 8 nucleotides
SM_b20486 and SM_b20487 overlap by 4 nucleotides
SM_b20487 and SM_b20488 are separated by 2 nucleotides
SM_b20488 and SM_b20489 are separated by 44 nucleotides
SM_b20485: SM_b20485 - sugar ABC transporter ATP-binding protein, at 500,933 to 502,462
_b20485
SM_b20486: SM_b20486 - sugar ABC transporter permease, at 502,455 to 503,456
_b20486
SM_b20487: SM_b20487 - sugar ABC transporter permease, at 503,453 to 504,451
_b20487
SM_b20488: SM_b20488 - hypothetical protein, at 504,454 to 505,302
_b20488
SM_b20489: SM_b20489 - carbohydrate kinase, at 505,347 to 506,819
_b20489
Group
Condition
SM
_b20485
SM
_b20486
SM
_b20487
SM
_b20488
SM
_b20489
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.4
-0.6
-0.4
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.2
-0.4
-0.5
-0.3
carbon source
L-Alanine (C)
-0.3
-0.2
-0.1
-0.3
-0.1
carbon source
D-Ribose (C)
-0.3
-0.2
-0.3
-0.0
-0.1
carbon source
acetate (C)
-0.2
-0.4
-0.3
+0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
-0.3
-0.5
+0.1
-0.4
carbon source
D-Mannose (C)
-0.4
-0.1
-0.2
-0.1
+0.2
stress
Cisplatin 0.0005 mg/ml
-0.1
-0.2
+0.2
-0.3
-0.3
stress
copper (II) chloride 1 mM
-0.3
-0.1
-0.2
-0.2
+0.2
stress
copper (II) chloride 1 mM
+0.1
+0.1
+0.1
-0.4
-0.4
stress
Aluminum chloride
-0.3
+0.3
-0.2
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.2
-0.4
-0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.4
-0.2
+0.0
-0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.8
+0.1
+0.3
-0.0
+0.2
stress
3-octanone 0.456 mM
+0.1
-0.2
-0.3
+0.3
+0.1
nitrogen source
NAG (N)
+0.1
-0.1
-0.4
+0.3
+0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.1
-0.1
-0.3
+0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.1
-0.0
+0.2
+0.3
nitrogen source
L-Arginine (N)
+0.2
+0.1
+0.1
-0.5
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.1
+0.2
+0.1
+0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
+0.1
-0.3
+0.4
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.1
-0.2
+0.1
+0.1
+0.5
nitrogen source
L-Serine (N)
+0.2
+0.1
-0.3
+0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.2
+0.3
-0.3
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.3
+0.2
+0.1
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.1
+0.0
+1.0
+0.0
r2a control
R2A control for volatile experiments
+0.1
-0.1
+0.3
+0.4
+0.3
nitrogen source
L-Asparagine (N)
+0.6
+0.1
+0.2
-0.1
+0.2
carbon source
D-Arabinose (C)
+0.2
+0.1
+0.4
+0.4
+0.1
r2a control
R2A control for volatile experiments
+0.2
+0.3
+0.2
+0.4
+0.2
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