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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20480 and SM_b20481 are separated by 123 nucleotides
SM_b20481 and SM_b20482 are separated by 1 nucleotides
SM_b20482 and SM_b20483 are separated by 7 nucleotides
SM_b20483 and SM_b20484 are separated by 273 nucleotides
SM_b20480: SM_b20480 - transcriptional regulator, at 494,013 to 494,795
_b20480
SM_b20481: SM_b20481 - asparagine synthetase (glutamine amidotransferase) protein, at 494,919 to 496,694
_b20481
SM_b20482: SM_b20482 - hypothetical protein, at 496,696 to 498,483
_b20482
SM_b20483: SM_b20483 - catabolite repressor protein, at 498,491 to 499,561
_b20483
SM_b20484: SM_b20484 - sugar ABC transporter substrate-binding protein, at 499,835 to 500,827
_b20484
Group
Condition
SM
_b20480
SM
_b20481
SM
_b20482
SM
_b20483
SM
_b20484
carbon source
Xylobiose (C)
-0.3
-0.1
-0.1
-1.6
-0.2
carbon source
Xylobiose (C)
-0.3
-0.1
-0.2
-1.4
-0.2
carbon source
L-Fucose (C)
+0.1
-0.0
+0.0
-1.5
-0.1
carbon source
Lactitol (C)
-0.6
-0.0
+0.2
-0.6
-0.3
stress
Aluminum chloride
-0.4
-0.1
-0.5
-0.2
-0.1
stress
Cisplatin 0.001 mg/ml
-0.6
+0.1
-0.1
-0.5
-0.3
carbon source
L-Histidine (C)
-0.1
-0.1
-0.0
-1.1
+0.1
carbon source
pipercolic (C)
-0.1
-0.1
-0.1
-0.7
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
+0.0
-0.1
-0.5
-0.4
dmso control
DMSO control
-0.1
+0.1
-0.1
-0.2
-0.8
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.1
-0.2
-0.0
-0.7
carbon source
L-Alanine (C)
-0.3
-0.2
-0.2
-0.5
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.2
-0.1
-0.4
-0.3
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.5
-0.1
+0.0
-0.5
+0.1
carbon source
L-Glutamine (C)
-0.2
+0.0
+0.2
-0.9
-0.0
nitrogen source
nitrate (N)
-0.0
+0.2
-0.1
-0.7
-0.3
carbon source
L-Alanine (C)
-0.1
+0.1
+0.1
-0.8
-0.2
stress
Nickel (II) chloride 1 mM
-0.9
+0.1
-0.1
+0.1
+0.1
r2a control
R2A control for volatile experiments
+0.2
+0.1
+0.1
-0.2
-0.8
carbon source
L-Proline (C)
-0.3
-0.0
+0.2
-0.6
+0.1
carbon source
D-Maltose (C)
-0.2
-0.1
+0.2
-0.7
+0.3
nitrogen source
L-Histidine (N)
-0.6
+0.3
+0.2
-0.3
+0.0
carbon source
D-Arabinose (C)
-0.0
-0.0
+0.1
-0.6
+0.5
stress
perchlorate 10 mM
+0.6
+0.1
-0.0
-0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.2
+0.1
-0.4
+0.5
nitrogen source
Gly-DL-Asp (N)
+0.0
-0.0
+0.4
+0.3
-0.5
carbon source
Maltitol (C)
+0.1
+0.0
-0.1
+0.7
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.1
+0.3
+0.7
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.3
-0.0
+0.1
+0.8
carbon source
Uridine (C)
-0.3
-0.1
+0.2
+1.4
+0.3
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