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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20432 and SM_b20433 overlap by 4 nucleotides
SM_b20433 and SM_b20434 are separated by 44 nucleotides
SM_b20434 and SM_b20435 are separated by 19 nucleotides
SM_b20435 and SM_b20436 are separated by 397 nucleotides
SM_b20432: SM_b20432 - threonine dehydratase, at 446,349 to 447,353
_b20432
SM_b20433: SM_b20433 - ectoine utilization protein EutC, at 447,350 to 448,339
_b20433
SM_b20434: SM_b20434 - hydrolasepeptidase, at 448,384 to 449,565
_b20434
SM_b20435: SM_b20435 - hypothetical protein, at 449,585 to 450,580
_b20435
SM_b20436: SM_b20436 - nitrate transporter protein, at 450,978 to 452,252
_b20436
Group
Condition
SM
_b20432
SM
_b20433
SM
_b20434
SM
_b20435
SM
_b20436
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
-2.1
-0.1
+0.1
+0.2
lb
LB
-0.3
-0.6
+0.0
-0.6
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-1.4
+0.2
-0.3
-0.0
nitrogen source
L-Leucine (N)
-0.0
-1.1
-0.1
+0.0
+0.0
stress
perchlorate 10 mM
-0.3
-0.3
-0.1
-0.5
+0.1
nitrogen source
Cytosine (N)
-0.3
-0.7
-0.2
+0.3
-0.1
carbon source
NAG (C)
-0.0
-0.7
-0.1
+0.1
-0.1
nutrient
Min media with glucose
-0.2
-0.8
+0.0
+0.1
+0.1
nitrogen source
L-Serine (N)
-0.0
-0.6
-0.1
+0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.3
+0.1
-0.5
+0.3
nitrogen source
L-Histidine (N)
-0.1
-0.3
-0.3
+0.2
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.2
-0.5
-0.3
+0.1
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.5
-0.1
+0.5
-0.2
carbon source
Sucrose (C)
-0.2
-0.4
+0.1
+0.3
-0.0
stress
Nickel (II) chloride 1 mM
+0.1
-0.5
+0.1
+0.2
-0.2
r2a control
R2A control for volatile experiments
+0.1
-0.6
+0.1
+0.1
+0.2
nitrogen source
L-Arginine (N)
+0.5
-0.5
-0.2
+0.1
-0.0
stress
Paraquat dichloride 0.2 mg/ml
-0.4
+0.6
-0.1
+0.0
+0.0
stress
Aluminum chloride
-0.1
-0.5
+0.5
+0.3
+0.1
stress
3-octanone 2.655166667 mM
+0.1
+0.6
-0.2
-0.1
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.2
+0.3
-0.1
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
+0.9
+0.0
-0.2
-0.2
stress
3-octanone 0.456 mM
+0.1
+0.6
+0.1
-0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.6
+0.1
-0.0
+0.2
carbon source
pipercolic (C)
+0.1
+0.4
-0.2
+0.4
+0.1
carbon source
D-Xylose (C)
-0.2
+0.5
+0.0
+0.3
+0.2
stress
1-octen-3-ol 0.6030326667 mM
+0.2
+0.5
-0.0
+0.2
-0.0
r2a control
R2A control
+0.2
+0.7
-0.1
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.5
+0.2
-0.0
-0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
+0.9
+0.3
-0.1
+0.3
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