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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20361 and SM_b20362 are separated by 90 nucleotides
SM_b20362 and SM_b20363 are separated by 30 nucleotides
SM_b20363 and SM_b20364 overlap by 4 nucleotides
SM_b20364 and SM_b20365 are separated by 174 nucleotides
SM_b20361: SM_b20361 - ionic voltage-gated channel protein, at 371,644 to 372,441
_b20361
SM_b20362: SM_b20362 - inositol monophosphatase, at 372,532 to 373,332
_b20362
SM_b20363: SM_b20363 - iron ABC transporter ATP-binding protein, at 373,363 to 374,424
_b20363
SM_b20364: SM_b20364 - iron ABC transporter permease, at 374,421 to 376,649
_b20364
SM_b20365: SM_b20365 - iron ABC transporter substrate-binding protein, at 376,824 to 377,852
_b20365
Group
Condition
SM
_b20361
SM
_b20362
SM
_b20363
SM
_b20364
SM
_b20365
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.2
-0.5
-0.4
-0.7
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.2
-0.4
-0.4
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.2
+0.1
-0.5
-0.5
stress
Nickel (II) chloride 1 mM
-0.3
+0.0
-0.2
-0.5
-0.1
stress
Cisplatin 0.001 mg/ml
-0.0
+0.1
+0.0
-0.6
-0.3
nitrogen source
L-Arginine (N)
-0.2
+0.4
-0.8
-0.3
+0.3
stress
Paraquat dichloride 0.2 mg/ml
-0.1
-0.3
-0.2
-0.4
+0.3
nutrient
L-Histidine
-0.1
-0.1
+0.0
+0.3
-0.6
carbon source
Methyl beta-D-glucopyranoside (C)
+0.1
+0.2
-0.4
-0.4
+0.1
nitrogen source
L-Histidine (N)
-0.2
+0.1
-0.1
+0.3
-0.3
nitrogen source
Cytosine (N)
-0.2
+0.2
-0.2
+0.4
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.2
+0.0
+0.1
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.3
-0.0
+0.1
-0.7
+0.3
carbon source
Fumarate (C)
+0.2
-0.0
-0.2
+0.4
-0.5
temperature
LB, 23C
-0.2
+0.1
+0.1
+0.3
-0.3
carbon source
Protocatechuic Acid (C)
-0.3
-0.1
+0.3
+0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
-0.2
-0.5
+0.2
+0.2
stress
Aluminum chloride
+0.2
+0.1
+0.4
+0.1
-0.5
r2a control
R2A control for volatile experiments
-0.2
-0.3
+0.2
+0.3
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
+0.0
+0.1
+0.4
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.1
+0.2
+0.1
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.0
+0.1
-0.6
+0.7
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
+0.2
+0.1
+0.2
+0.3
r2a control
R2A control for volatile experiments
-0.1
-0.2
+0.4
+0.4
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.0
+0.0
+0.6
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.2
+0.5
-0.3
+0.2
stress
Chlorite 0.1 mM
+0.4
+0.2
+0.3
+0.2
-0.1
nitrogen source
L-Leucine (N)
+0.1
-0.1
+0.3
+0.7
+0.0
pH
LB, pH7
-0.1
+0.2
+0.0
+0.4
+0.4
nitrogen source
Gelatin (N)
-0.0
+0.1
+0.4
+0.4
+0.6
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