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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20344 and SM_b20345 are separated by 136 nucleotides
SM_b20345 and SM_b20346 are separated by 28 nucleotides
SM_b20346 and SM_b20347 are separated by 92 nucleotides
SM_b20347 and SM_b20348 are separated by 186 nucleotides
SM_b20344: SM_b20344 - transcriptional regulator, at 349,255 to 350,211
_b20344
SM_b20345: SM_b20345 - efflux protein, at 350,348 to 353,497
_b20345
SM_b20346: SM_b20346 - efflux protein, at 353,526 to 354,680
_b20346
SM_b20347: SM_b20347 - transcriptional regulator, at 354,773 to 355,381
_b20347
SM_b20348: SM_b20348 - hypothetical protein, at 355,568 to 356,395
_b20348
Group
Condition
SM
_b20344
SM
_b20345
SM
_b20346
SM
_b20347
SM
_b20348
carbon source
Myristic (C)
+0.0
-4.2
-4.0
-2.4
+0.2
carbon source
Myristic (C)
+0.4
-4.0
-4.1
-2.5
+0.4
stress
copper (II) chloride 1 mM
+0.0
-0.8
-1.5
-0.5
-0.1
nitrogen source
nitrate (N)
+0.1
-0.5
-0.5
-0.6
+0.1
nitrogen source
L-Arginine (N)
-0.4
-0.6
-0.3
+0.5
-0.6
nitrogen source
Cytosine (N)
+0.1
-0.0
+0.0
-1.6
+0.5
stress
sodium fluoride 100 mM
+0.0
-0.7
-0.6
-0.0
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.2
+0.3
-0.7
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.2
+0.3
-0.4
-0.5
pH
LB, pH6
+0.1
+0.1
+0.2
-0.9
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.1
+0.1
+0.8
-0.6
stress
perchlorate 10 mM
-0.6
+0.7
+0.4
+0.1
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.5
-0.1
-0.2
+0.5
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.4
+0.7
-1.1
-0.4
stress
Chlorite 0.1 mM
+0.1
+0.5
+0.5
+0.1
-0.6
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.1
+0.3
+0.3
+0.6
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
+0.3
+0.2
-0.3
+0.7
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
+0.3
+0.2
+0.5
-0.3
stress
Paraquat dichloride 0.3 mg/ml
+0.3
-0.1
-0.1
+1.1
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
+0.5
+0.6
+0.3
-0.4
stress
Chloride 200 mM
-0.3
+0.6
+0.3
+0.5
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.0
+0.4
+0.3
+0.7
-0.3
stress
Thallium(I) acetate 0.0025 mg/ml
-0.4
+0.6
+0.6
+0.9
-0.4
stress
D-Cycloserine 0.05 mg/ml
-0.1
+0.4
+0.6
+0.4
+0.3
stress
Paraquat dichloride 0.05 mg/ml
-0.1
+0.4
+0.6
+0.5
+0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.0
+0.4
+0.4
+0.8
-0.0
temperature
LB, 30C
-0.0
+0.3
+0.4
+0.9
+0.2
lb
LB
+0.1
+0.4
+0.4
+0.4
+0.4
stress
Fusidic 0.0001 mg/ml
+0.2
+0.9
+0.7
+0.5
+0.1
stress
Nickel (II) chloride 1 mM
+0.3
+0.8
+1.1
+0.6
-0.1
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