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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20331 and SM_b20332 are separated by 691 nucleotides
SM_b20332 and SM_b20333 are separated by 143 nucleotides
SM_b20333 and SM_b20334 are separated by 615 nucleotides
SM_b20334 and SM_b20335 are separated by 220 nucleotides
SM_b20331: SM_b20331 - hypothetical protein, at 334,596 to 334,952
_b20331
SM_b20332: SM_b20332 - hypothetical protein, at 335,644 to 336,585
_b20332
SM_b20333: SM_b20333 - transporter protein, at 336,729 to 338,849
_b20333
SM_b20334: SM_b20334 - hypothetical protein, at 339,465 to 340,376
_b20334
SM_b20335: SM_b20335 - hypothetical protein, at 340,597 to 341,877
_b20335
Group
Condition
SM
_b20331
SM
_b20332
SM
_b20333
SM
_b20334
SM
_b20335
stress
sodium fluoride 100 mM
N.D.
-0.0
-0.7
-0.1
-0.1
stress
Sisomicin 0.004 mg/ml
N.D.
-0.4
-0.1
-0.3
-0.1
stress
3-octanone 0.456 mM
N.D.
-0.4
-0.1
+0.1
-0.4
nitrogen source
Gelatin (N)
N.D.
-0.7
-0.0
+0.1
+0.0
stress
Cisplatin 0.001 mg/ml
N.D.
-0.5
+0.3
-0.4
+0.0
stress
Paraquat dichloride 0.2 mg/ml
N.D.
-0.3
+0.2
-0.3
+0.0
carbon source
Myristic (C)
N.D.
-0.1
+0.1
+0.2
-0.5
stress
Thallium(I) acetate 0.0025 mg/ml
N.D.
-0.4
+0.2
-0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
N.D.
-0.5
+0.3
-0.2
+0.1
stress
Paraquat dichloride 0.3 mg/ml
N.D.
-0.4
+0.4
-0.0
-0.3
stress
Cisplatin 0.0005 mg/ml
N.D.
-0.4
+0.3
-0.1
+0.1
stress
Thallium(I) acetate 0.001 mg/ml
N.D.
+0.1
+0.3
-0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.2
+0.4
-0.2
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
-0.6
+0.3
-0.1
+0.6
pH
LB, pH6
N.D.
-0.4
+0.4
-0.1
+0.4
nitrogen source
L-Arginine (N)
N.D.
-0.4
+0.2
+0.5
-0.0
r2a control
R2A control for volatile experiments
N.D.
+0.4
+0.3
-0.5
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.4
+1.0
-0.2
+0.2
stress
Chlorite 0.1 mM
N.D.
+0.3
+0.5
-0.2
+0.0
stress
perchlorate 10 mM
N.D.
-0.1
+0.3
+0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.0
+0.4
+0.1
+0.3
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.2
+0.5
+0.0
+0.0
lb
LB
N.D.
-0.0
+0.4
+0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.0
+0.4
+0.1
+0.4
stress
Nickel (II) chloride 1 mM
N.D.
-0.3
+1.4
-0.0
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.2
+0.7
+0.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.1
+0.9
-0.1
+0.1
stress
Chloride 200 mM
N.D.
+0.0
+0.9
+0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.6
+0.6
-0.3
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
+0.6
+0.4
+0.3
+0.2
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