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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20316 and SM_b20317 are separated by 117 nucleotides
SM_b20317 and SM_b20318 are separated by 1 nucleotides
SM_b20318 and SM_b20319 are separated by 50 nucleotides
SM_b20319 and SM_b20320 are separated by 140 nucleotides
SM_b20316: SM_b20316 - sugar ABC transporter substrate-binding protein, at 317,829 to 318,830
_b20316
SM_b20317: SM_b20317 - sugar ABC transporter ATP-binding protein, at 318,948 to 320,498
_b20317
SM_b20318: SM_b20318 - sugar ABC transporter permease, at 320,500 to 321,531
_b20318
SM_b20319: SM_b20319 - hypothetical protein, at 321,582 to 322,799
_b20319
SM_b20320: SM_b20320 - TRAP-type large permease component, at 322,940 to 323,935
_b20320
Group
Condition
SM
_b20316
SM
_b20317
SM
_b20318
SM
_b20319
SM
_b20320
nitrogen source
L-Histidine (N)
-0.5
-1.1
-0.0
+0.0
-1.0
carbon source
Fumarate (C)
-0.4
-0.2
+0.1
-0.0
-1.7
nitrogen source
nitrate (N)
-0.2
+0.0
+0.2
-0.2
-1.8
pH
LB, pH8
-0.2
+0.2
+0.1
-0.3
-1.8
pH
LB, pH6
-0.5
+0.3
+0.1
-0.2
-1.3
carbon source
D-Xylose (C)
-0.0
-0.2
+0.2
+0.1
-1.4
carbon source
D-Xylose (C)
+0.2
-0.4
+0.2
-0.0
-1.4
lb no stress control
LB no stress control
-0.3
+0.0
+0.1
+0.1
-1.2
pH
LB, pH6
-0.4
+0.1
+0.1
-0.4
-0.7
carbon source
pipercolic (C)
+0.1
-0.3
+0.2
+0.0
-1.3
nitrogen source
Gelatin (N)
-0.3
-0.8
+0.1
+0.1
-0.4
stress
Thallium(I) acetate 0.0025 mg/ml
-0.7
-0.2
+0.4
+0.2
-0.7
carbon source
D-Glucose (C)
-0.1
-0.3
+0.2
+0.2
-0.8
stress
Chlorite 0.1 mM
-0.3
-0.9
-0.0
-0.1
+0.7
stress
Cisplatin 0.001 mg/ml
+0.2
+0.3
+0.2
-0.5
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.5
+0.2
-0.4
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.2
+0.4
-0.2
-0.6
nitrogen source
L-Glutamine (N)
-0.5
+0.0
-0.0
-0.4
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.5
-0.2
-0.2
+0.9
nitrogen source
L-Arginine (N)
-0.5
-1.1
-0.1
+0.0
+1.7
nutrient
Min media with glucose
+0.1
-0.4
-0.1
-0.4
+0.9
stress
Chloride 200 mM
+0.2
+0.6
+0.3
-0.5
-0.4
carbon source
D-Fructose (C)
-0.3
+0.2
-0.3
-0.1
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.1
-0.2
-0.3
+1.0
nitrogen source
L-Asparagine (N)
-0.6
+0.1
+0.2
+0.1
+0.9
carbon source
palatinose (C)
-0.4
+0.4
+0.1
-0.1
+0.6
stress
perchlorate 10 mM
+0.0
+0.3
+0.3
-0.4
+0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.1
+0.1
+0.3
+0.8
stress
Nickel (II) chloride 1 mM
+0.3
+0.4
+0.1
+0.1
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.3
+0.4
-0.1
+0.8
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