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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20313 and SM_b20314 overlap by 32 nucleotides
SM_b20314 and SM_b20315 are separated by 390 nucleotides
SM_b20315 and SM_b20316 are separated by 79 nucleotides
SM_b20316 and SM_b20317 are separated by 117 nucleotides
SM_b20313: SM_b20313 - glycerone kinase, at 314,728 to 315,411
_b20313
SM_b20314: SM_b20314 - glycerone kinase, at 315,380 to 316,372
_b20314
SM_b20315: SM_b20315 - sugar ABC transporter permease, at 316,763 to 317,749
_b20315
SM_b20316: SM_b20316 - sugar ABC transporter substrate-binding protein, at 317,829 to 318,830
_b20316
SM_b20317: SM_b20317 - sugar ABC transporter ATP-binding protein, at 318,948 to 320,498
_b20317
Group
Condition
SM
_b20313
SM
_b20314
SM
_b20315
SM
_b20316
SM
_b20317
carbon source
acetate (C)
-2.7
-1.4
+0.0
-0.1
-0.3
nitrogen source
L-Arginine (N)
-0.9
-1.2
+0.2
-0.5
-1.1
nitrogen source
L-Histidine (N)
-0.8
-0.9
+0.1
-0.5
-1.1
carbon source
L-Fucose (C)
-1.6
-1.0
-0.0
-0.3
-0.1
carbon source
methyl-beta-D-xylopyranoside (C)
-1.4
-1.0
-0.0
+0.0
-0.3
carbon source
D-Arabinose (C)
-1.1
-1.1
-0.1
+0.1
-0.0
carbon source
5-Aminovaleric (C)
-0.9
-0.8
-0.1
+0.1
-0.7
carbon source
Myristic (C)
-1.3
-0.9
+0.1
+0.0
-0.1
carbon source
Lactitol (C)
-1.0
-0.9
+0.0
-0.1
-0.1
nitrogen source
Gly-DL-Asp (N)
-0.7
-0.8
-0.2
-0.5
+0.1
carbon source
D-Glucose (C)
-0.8
-0.8
-0.1
-0.1
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.8
-0.9
+0.0
+0.1
-0.4
nutrient
L-Lysine
-0.9
-0.8
+0.1
-0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
-0.7
-0.5
-0.1
+0.1
carbon source
D-Glucose (C)
-0.5
-0.7
+0.1
-0.6
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-1.0
-0.8
+0.0
-0.1
+0.0
nutrient
L-Histidine
-1.2
-0.6
-0.1
+0.2
-0.1
carbon source
acetate (C)
-1.4
-0.8
+0.2
+0.3
+0.1
carbon source
D-Glucose (C)
-0.6
-0.7
+0.2
-0.1
-0.3
nitrogen source
L-Glutamine (N)
-1.2
-0.1
+0.3
-0.5
+0.0
nitrogen source
L-Asparagine (N)
-0.5
-0.7
+0.3
-0.6
+0.1
carbon source
5-Aminovaleric (C)
-0.8
-0.8
+0.2
+0.2
-0.2
carbon source
D-Salicin (C)
-1.2
-0.3
+0.2
-0.2
+0.2
nitrogen source
NAG (N)
-0.7
-0.6
+0.3
-0.4
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.9
-0.6
-0.1
-0.6
-0.0
stress
Chlorite 0.1 mM
+0.6
+0.6
-0.2
-0.3
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.3
-0.5
+0.7
+0.3
pH
LB, pH6
+0.7
+0.6
-0.1
-0.4
+0.1
stress
perchlorate 10 mM
+0.7
+0.7
-0.2
+0.0
+0.3
pH
LB, pH6
+1.3
+1.0
-0.2
-0.5
+0.3
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