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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20297 and SM_b20298 overlap by 4 nucleotides
SM_b20298 and SM_b20299 are separated by 13 nucleotides
SM_b20299 and SM_b20300 are separated by 336 nucleotides
SM_b20300 and SM_b20301 overlap by 4 nucleotides
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
SM_b20298: SM_b20298 - hypothetical protein, at 304,747 to 305,682
_b20298
SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595
_b20299
SM_b20300: SM_b20300 - adenylate cyclase, at 306,932 to 308,845
_b20300
SM_b20301: SM_b20301 - dehydgrogenase, at 308,842 to 309,972
_b20301
Group
Condition
SM
_b20297
SM
_b20298
SM
_b20299
SM
_b20300
SM
_b20301
carbon source
L-Fucose (C)
-0.1
-0.2
-0.1
-0.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-1.1
-0.0
-0.3
+0.2
stress
copper (II) chloride 1 mM
+0.0
-0.8
-0.2
-0.0
+0.1
stress
Nickel (II) chloride 1 mM
-0.0
-0.7
+0.1
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
+0.2
-0.2
+0.1
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
+0.3
-0.1
+0.1
-0.0
r2a control
R2A control for volatile experiments
-0.0
-0.0
-0.5
+0.3
+0.1
nitrogen source
NAG (N)
-0.2
-0.2
+0.1
+0.0
+0.3
stress
Cisplatin 0.001 mg/ml
+0.2
-0.4
-0.1
+0.1
+0.1
carbon source
acetate (C)
-0.1
+0.4
-0.1
-0.0
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
+0.1
-0.2
+0.1
+0.2
r2a control
R2A control for volatile experiments
-0.3
+0.2
-0.1
+0.1
+0.2
stress
Chlorite 0.1 mM
-0.1
+0.1
+0.3
+0.1
-0.2
stress
3-octanone 2.655166667 mM
+0.2
-0.3
+0.3
-0.0
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.3
+0.3
-0.0
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.4
-0.5
+0.3
+0.0
nitrogen source
L-Arginine (N)
+0.0
-0.2
-0.1
+0.3
+0.3
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.2
-0.0
+0.3
+0.1
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
+0.5
-0.1
+0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.5
+0.4
+0.0
-0.5
r2a control
R2A control for volatile experiments
-0.2
+0.3
+0.0
+0.2
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
+0.5
+0.2
+0.1
-0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
+0.5
-0.1
+0.0
+0.3
stress
3-octanone 0.456 mM
-0.3
+0.5
+0.1
+0.0
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.6
-0.2
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.4
+0.1
-0.1
+0.3
nitrogen source
L-Asparagine (N)
+0.1
+0.5
+0.2
-0.2
+0.2
nitrogen source
L-Serine (N)
-0.1
+0.4
+0.3
+0.1
+0.1
nutrient
L-Histidine
+0.2
+0.4
+0.2
+0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.4
+0.0
-0.1
+0.4
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