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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20264 and SM_b20265 are separated by 12 nucleotides
SM_b20265 and SM_b20266 overlap by 8 nucleotides
SM_b20266 and SM_b20267 are separated by 0 nucleotides
SM_b20267 and SM_b20268 are separated by 14 nucleotides
SM_b20264: SM_b20264 - amino acid ABC transporter permease, at 269,391 to 270,056
_b20264
SM_b20265: SM_b20265 - amino acid ABC transporter permease, at 270,069 to 270,722
_b20265
SM_b20266: SM_b20266 - amino acid ABC transporter ATP-binding protein, at 270,715 to 271,437
_b20266
SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679
_b20267
SM_b20268: SM_b20268 - hydroxyproline-2-epimerase, at 272,694 to 273,695
_b20268
Group
Condition
SM
_b20264
SM
_b20265
SM
_b20266
SM
_b20267
SM
_b20268
nitrogen source
L-Asparagine (N)
-0.3
+0.1
-0.1
-1.3
-0.4
carbon source
L-Proline (C)
-0.5
-0.6
-0.6
-0.2
+0.0
stress
Chlorite 0.1 mM
+0.3
-1.0
+0.1
+1.0
-1.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.8
-0.4
-1.8
+0.3
carbon source
D-Xylose (C)
+0.2
-0.3
+0.1
-0.7
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.0
+0.3
-1.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-0.1
-0.2
-0.8
-0.3
carbon source
acetate (C)
+0.2
+0.1
+0.1
-0.9
-0.2
carbon source
Uridine (C)
+0.3
-0.1
+0.2
-0.6
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-0.6
-0.1
+1.5
-1.0
carbon source
D-Mannose (C)
+0.1
-0.5
+0.2
+0.3
-0.3
lb
LB
+0.1
+0.5
+0.3
-0.5
-0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.4
+0.4
-0.2
-0.6
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.6
+0.2
-0.2
-0.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.6
+0.4
-1.1
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.2
+0.2
+0.3
-0.4
r2a control
R2A control for volatile experiments
+0.2
-0.4
-0.1
+0.7
+0.2
stress
Paraquat dichloride 0.05 mg/ml
+0.4
+0.6
+0.2
-0.1
-0.5
stress
1-octen-3-ol 0.6030326667 mM
-0.1
+0.3
-0.2
+0.5
+0.4
nutrient
Min media with glucose
+0.4
+0.7
+0.3
-0.3
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
+0.3
-0.1
+0.8
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.6
-0.2
+0.0
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
+0.1
+0.2
+0.8
-0.1
r2a control
R2A control for volatile experiments
+0.4
+0.1
+0.1
+0.9
-0.1
stress
Aluminum chloride
+0.4
+0.2
+0.2
+0.9
-0.2
pH
LB, pH6
+0.0
+0.2
+0.5
+0.4
+0.4
r2a control
R2A control for volatile experiments
+0.5
+0.3
+0.3
+0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.7
+0.4
-0.1
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.8
+0.1
+0.6
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.6
+0.2
+0.2
+1.1
+0.0
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