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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20257 and SM_b20258 are separated by 104 nucleotides
SM_b20258 and SM_b20259 are separated by 120 nucleotides
SM_b20259 and SM_b20260 are separated by 47 nucleotides
SM_b20260 and SM_b20261 are separated by 63 nucleotides
SM_b20257: SM_b20257 - adenylate cyclase, at 262,074 to 263,132
_b20257
SM_b20258: SM_b20258 - transcriptional regulator, at 263,237 to 263,947
_b20258
SM_b20259: SM_b20259 - dihydrodipicolinate synthase, at 264,068 to 265,030
_b20259
SM_b20260: SM_b20260 - hypothetical protein, at 265,078 to 265,470
_b20260
SM_b20261: SM_b20261 - malate dehydrogenase, at 265,534 to 266,571
_b20261
Group
Condition
SM
_b20257
SM
_b20258
SM
_b20259
SM
_b20260
SM
_b20261
carbon source
pipercolic (C)
+0.1
-3.0
+0.2
+0.3
-1.5
carbon source
pipercolic (C)
+0.2
-4.2
-0.0
+0.7
-0.5
stress
Sisomicin 0.004 mg/ml
-0.4
-0.8
-0.4
-1.3
-0.4
nutrient
Min media with glucose
+0.1
-1.5
-0.0
-0.8
-0.7
stress
Thallium(I) acetate 0.0025 mg/ml
-0.6
-1.3
-0.1
-0.8
+0.4
stress
nitrate 40 mM
-0.6
-1.1
-0.2
-0.7
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-2.7
+0.2
+0.6
+0.1
stress
Paraquat dichloride 0.3 mg/ml
-0.6
-0.6
-0.3
-1.0
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.6
+0.4
-2.4
+1.2
stress
Paraquat dichloride 0.2 mg/ml
-0.3
-1.8
-0.1
-0.2
+0.8
nitrogen source
L-Histidine (N)
+0.3
-1.0
-0.0
-1.0
+0.2
pH
LB, pH8
-0.0
-1.2
-0.0
+0.5
-0.8
stress
copper (II) chloride 1 mM
-0.3
-0.5
-0.3
-1.6
+1.2
stress
Thallium(I) acetate 0.001 mg/ml
-0.5
-1.0
-0.1
-0.1
+1.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.7
+0.2
-0.9
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-1.3
-0.3
+0.7
+0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.9
+0.0
-0.7
+1.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-2.0
-0.2
+1.2
+1.5
pH
LB, pH6
-0.1
-0.1
-0.1
-1.8
+1.9
carbon source
L-Lysine (C)
+0.3
-1.3
+0.1
+0.2
+0.8
nitrogen source
L-Leucine (N)
-0.6
-0.7
+0.1
+1.1
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-1.4
+0.5
+1.3
+0.3
carbon source
5-Aminovaleric (C)
+0.7
-1.0
+0.2
+0.7
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.6
-1.2
+0.3
+0.4
+1.1
pH
LB, pH6
+0.1
-0.6
+0.1
+0.8
+1.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
-0.6
+0.3
+0.7
+1.1
nitrogen source
L-Arginine (N)
+1.0
+0.2
-0.0
+1.5
-0.3
carbon source
L-Proline (C)
-0.2
+3.7
+0.0
+0.2
+0.1
carbon source
L-Alanine (C)
+0.2
+9.1
+0.1
+0.4
-0.1
carbon source
L-Alanine (C)
-0.1
+9.3
-0.3
+0.9
+0.4
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