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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20229 and SM_b20230 are separated by 231 nucleotides
SM_b20230 and SM_b20231 are separated by 59 nucleotides
SM_b20231 and SM_b20232 are separated by 57 nucleotides
SM_b20232 and SM_b20233 overlap by 11 nucleotides
SM_b20229: SM_b20229 - nutrient deprivation-induced protein, at 233,826 to 234,800
_b20229
SM_b20230: SM_b20230 - smc22-r protein, at 235,032 to 236,036
_b20230
SM_b20231: SM_b20231 - sugar ABC transporter substrate-binding protein, at 236,096 to 237,451
_b20231
SM_b20232: SM_b20232 - sugar ABC transporter permease, at 237,509 to 238,453
_b20232
SM_b20233: SM_b20233 - sugar ABC transporter permease, at 238,443 to 239,291
_b20233
Group
Condition
SM
_b20229
SM
_b20230
SM
_b20231
SM
_b20232
SM
_b20233
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.4
-0.2
+0.0
-0.1
r2a control
R2A control for volatile experiments
+0.1
-0.5
-0.1
-0.1
-0.2
r2a control
R2A control for volatile experiments
-0.2
-0.2
+0.1
-0.2
-0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.5
+0.3
-0.1
-0.2
-0.3
nitrogen source
L-Asparagine (N)
-0.6
+0.4
-0.3
-0.3
+0.1
nitrogen source
L-Leucine (N)
-0.2
+0.2
-0.3
-0.1
-0.1
r2a control
R2A control for volatile experiments
+0.2
-0.5
+0.1
-0.1
-0.1
nitrogen source
NAG (N)
-0.3
+0.3
-0.0
-0.2
-0.2
stress
3-octanone 0.456 mM
+0.3
-0.4
+0.1
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.0
+0.3
-0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.1
-0.2
-0.1
+0.4
stress
3-octanone 5.310333333 mM
+0.2
-0.2
+0.3
-0.1
-0.2
lb no stress control
LB no stress control
+0.3
-0.5
+0.2
-0.0
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.2
-0.1
-0.1
+0.2
stress
1-octen-3-ol 0.5427293333 mM
+0.4
-0.3
+0.0
-0.1
+0.2
nitrogen source
Cytosine (N)
-0.4
+0.5
-0.1
-0.0
+0.1
lb no stress control
LB no stress control
+0.3
-0.3
+0.0
-0.1
+0.3
carbon source
D-Glucose (C)
-0.4
+0.1
+0.1
+0.1
+0.4
nitrogen source
Uridine (N)
-0.6
+0.4
+0.1
+0.0
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.3
-0.3
-0.0
+0.1
stress
Aluminum chloride
+0.1
+0.3
-0.1
-0.2
+0.4
nitrogen source
L-Arginine (N)
-0.0
+0.4
+0.3
-0.5
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.1
+0.0
-0.2
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.5
+0.0
-0.0
-0.1
+0.3
stress
Sisomicin 0.004 mg/ml
+0.4
-0.1
+0.0
+0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.1
+0.1
+0.2
+0.6
carbon source
L-Leucine (C)
+0.1
+0.3
+0.2
+0.1
+0.1
stress
Paraquat dichloride 0.2 mg/ml
+0.5
+0.3
+0.1
-0.0
+0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+0.3
+0.2
-0.1
+0.3
stress
perchlorate 10 mM
+0.1
+0.4
+0.3
+0.2
+0.2
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