Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSM_b20198 and SM_b20199 are separated by 32 nucleotidesSM_b20199 and SM_b20200 are separated by 2 nucleotidesSM_b20200 and SM_b20201 are separated by 10 nucleotidesSM_b20201 and SM_b20202 are separated by 10 nucleotides SM_b20198: SM_b20198 - ribulose bisophosphate carboxylase, at 205,767 to 207,227 _b20198 SM_b20199: SM_b20199 - fructose-1,6-bisphosphate aldolase, at 207,260 to 208,339 _b20199 SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426 _b20200 SM_b20201: SM_b20201 - phosphoribulokinase, at 210,437 to 211,306 _b20201 SM_b20202: SM_b20202 - fructose-1,6-bisphosphatase, at 211,317 to 212,366 _b20202
Group Condition SM_b20198 SM_b20199 SM_b20200 SM_b20201 SM_b20202
carbon source L-Proline (C) -6.6 -3.7 -5.1 +0.6 +0.6
carbon source pipercolic (C) -4.4 -2.8 -3.2 -0.6 -0.5
carbon source pipercolic (C) -3.7 -1.9 -3.4 -0.2 -0.5
carbon source L-Lysine (C) -3.3 -0.7 -0.9 -0.1 -0.3
carbon source L-Lysine (C) -3.2 -0.4 -1.0 +0.1 +0.1
carbon source L-Lysine (C) -1.7 +0.1 -0.6 -0.3 -0.3
carbon source L-Histidine (C) -1.0 -0.3 -0.3 +0.2 -0.0
nitrogen source L-Histidine (N) +0.1 -0.1 -0.3 -0.0 -0.7
nitrogen source Gelatin (N) -0.1 +0.1 -0.1 -0.4 -0.4
nitrogen source L-Arginine (N) -0.3 +0.1 -0.1 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.6 -0.1 -0.3 -0.0
nitrogen source L-Leucine (N) +0.1 +0.0 -0.3 +0.0 -0.6
stress Aluminum chloride -0.2 +0.1 +0.1 -0.3 -0.3
nutrient Min media with glucose +0.1 -0.5 -0.2 +0.2 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.6 +0.4 -0.1 -0.0
stress D-Cycloserine 0.05 mg/ml -0.2 +0.3 -0.2 -0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -0.1 -0.5 +0.0 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.3 +0.1 +0.2 -0.2
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.2 +0.4 -0.1 -0.1 -0.1
carbon source Lactitol (C) -0.2 -0.1 -0.2 +0.4 +0.1
carbon source Lactitol (C) -0.2 -0.1 +0.1 +0.3 -0.2
stress Cisplatin 0.0005 mg/ml -0.3 +0.5 +0.2 +0.1 -0.3
stress nitrate 40 mM +0.1 +0.4 +0.3 -0.2 -0.4
stress Chlorite 0.1 mM -0.3 +0.3 +0.1 +0.2 -0.1
carbon source methyl 3-keto-a-D-glucopyranoside (C) -0.1 +0.4 -0.3 -0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.1 +0.3 +0.3 -0.4
lb no stress control LB no stress control +0.1 -0.2 +0.2 +0.1 +0.3
stress Paraquat dichloride 0.2 mg/ml +0.2 +0.3 +0.3 -0.1 +0.0
stress copper (II) chloride 1 mM +0.1 +0.5 +0.2 -0.0 +0.0
nitrogen source L-Asparagine (N) +0.2 +0.7 +0.2 +0.0 -0.3
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