Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSM_b20186 and SM_b20194 are separated by 311 nucleotidesSM_b20194 and SM_b20195 are separated by 3 nucleotidesSM_b20195 and SM_b20196 overlap by 4 nucleotidesSM_b20196 and SM_b20197 are separated by 11 nucleotides SM_b20186: SM_b20186 - glutathione-dependent formaldehyde-activating protein, at 202,255 to 202,824 _b20186 SM_b20194: SM_b20194 - hypothetical protein, at 203,136 to 203,702 _b20194 SM_b20195: SM_b20195 - pentose-5-phosphate-3-epimerase, at 203,706 to 204,392 _b20195 SM_b20196: SM_b20196 - CbbX protein, at 204,389 to 205,324 _b20196 SM_b20197: SM_b20197 - ribulose-1,5-bisphosphate carboxylase small subunit (EC 4.1.1.39) (from data), at 205,336 to 205,725 _b20197
Group Condition SM_b20186 SM_b20194 SM_b20195 SM_b20196 SM_b20197
carbon source L-Proline (C) +0.0 +0.1 +0.1 -4.9 -5.5
carbon source pipercolic (C) +0.1 +0.2 -0.1 -3.8 -5.3
carbon source pipercolic (C) +0.1 +0.1 -0.0 -3.9 -4.7
carbon source L-Lysine (C) +0.0 +0.1 -0.2 -2.4 -3.7
carbon source L-Lysine (C) -0.3 -0.2 +0.0 -2.0 -3.4
carbon source L-Lysine (C) -0.0 -0.1 -0.2 -0.6 -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.5 -0.1 +0.1 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.3 -0.4 +0.1 -1.1
stress Thallium(I) acetate 0.0025 mg/ml -0.2 -0.5 -0.8 +0.0 -0.1
stress Sisomicin 0.004 mg/ml -0.0 -1.0 -0.2 +0.0 -0.4
nitrogen source Cytosine (N) -1.0 +0.4 -0.9 +0.2 -0.3
stress Chlorite 0.1 mM -0.4 -0.3 -0.4 -0.0 -0.2
stress Aluminum chloride -0.3 -0.6 +0.3 -0.1 -0.5
carbon source L-Histidine (C) +0.4 +0.3 -0.1 -0.5 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -1.1 -0.1 -0.0 +0.4
nitrogen source D-Glucosamine Hydrochloride (N) -0.5 +0.0 -0.5 -0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.5 -0.4 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 +0.3 -0.6 -0.4 +0.6
stress Paraquat dichloride 0.3 mg/ml +0.3 -0.5 -0.4 +0.1 -0.3
nitrogen source NAG (N) -0.4 +0.4 -0.5 -0.2 +0.2
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.0 +0.5 -0.1 +0.1 -0.9
nitrogen source L-Leucine (N) +0.3 +0.0 -0.5 -0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.2 -0.9 +0.5 +0.2
pH LB, pH6 +0.3 -0.6 -0.1 +0.1 +0.4
nitrogen source L-Histidine (N) -0.6 +0.6 -0.5 +0.2 +0.6
nitrogen source L-Arginine (N) -0.6 +0.5 +0.1 +0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.3 +0.2 +0.3 +0.5
stress 6-Pentyl-2H-pyran-2-one 0.385649 mM -0.4 +0.1 +0.4 +0.2 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.3 +0.3 +0.1 +0.5
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.2 +0.3 -0.4 +0.3 +1.1
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