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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20175 and SM_b20176 overlap by 4 nucleotides
SM_b20176 and SM_b20177 are separated by 173 nucleotides
SM_b20177 and SM_b20178 are separated by 126 nucleotides
SM_b20178 and SM_b20179 are separated by 1 nucleotides
SM_b20175: SM_b20175 - hypothetical protein, at 193,345 to 194,211
_b20175
SM_b20176: SM_b20176 - hypothetical protein, at 194,208 to 194,753
_b20176
SM_b20177: SM_b20177 - hypothetical protein, at 194,927 to 195,448
_b20177
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738
_b20179
Group
Condition
SM
_b20175
SM
_b20176
SM
_b20177
SM
_b20178
SM
_b20179
carbon source
succinate (C)
-0.2
-0.3
-0.3
-0.2
-0.2
carbon source
L-Lysine (C)
-0.1
-0.5
-0.1
-0.4
-0.1
carbon source
5-Aminovaleric (C)
-0.3
+0.2
-0.5
-0.3
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.7
+0.2
+0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
-0.9
-0.4
+0.3
nitrogen source
L-Glutamine (N)
-0.3
+0.3
-0.1
-0.5
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.3
+0.3
-0.4
-0.1
-0.1
carbon source
D-Cellobiose (C)
-0.2
+0.3
-0.2
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
-0.7
+0.1
-0.3
+0.2
stress
1-octen-3-ol 0.6030326667 mM
-0.3
-0.4
-0.1
+0.2
+0.2
nitrogen source
L-Arginine (N)
+0.2
-0.8
-0.6
+0.5
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.2
+0.2
-0.2
+0.2
carbon source
D-Xylose (C)
-0.1
+0.3
-0.3
+0.2
-0.3
carbon source
Xylobiose (C)
-0.2
+0.2
+0.2
-0.3
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.3
-0.1
+0.3
-0.6
-0.1
stress
Nickel (II) chloride 1 mM
-0.0
+0.5
-0.2
-0.4
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
-0.3
-0.4
+0.3
+0.3
carbon source
Methyl beta-D-glucopyranoside (C)
-0.3
+0.4
+0.2
-0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.5
+0.6
-0.1
+0.2
nitrogen source
L-Asparagine (N)
+0.1
+0.5
-0.3
-0.1
-0.1
nitrogen source
Uridine (N)
+0.1
-0.0
+0.1
-0.5
+0.5
stress
Cisplatin 0.001 mg/ml
+0.3
+0.4
-0.0
-0.3
-0.2
r2a control
R2A control for volatile experiments
-0.1
+0.3
-0.3
+0.2
+0.2
stress
Cisplatin 0.0005 mg/ml
+0.0
+0.3
+0.4
-0.1
-0.3
stress
perchlorate 10 mM
-0.3
+0.2
+0.2
+0.6
-0.4
stress
copper (II) chloride 1 mM
-0.0
+0.7
+0.2
-0.1
-0.2
stress
nitrate 40 mM
+0.3
+0.2
+0.4
-0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.7
-0.2
+0.0
+0.0
stress
Sisomicin 0.004 mg/ml
+0.2
+0.6
+0.1
-0.0
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.7
+0.1
-0.0
+0.2
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