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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20162 and SM_b20163 are separated by 44 nucleotides
SM_b20163 and SM_b20164 overlap by 4 nucleotides
SM_b20164 and SM_b20165 are separated by 106 nucleotides
SM_b20165 and SM_b20166 overlap by 4 nucleotides
SM_b20162: SM_b20162 - transcriptional regulator, at 180,077 to 180,766
_b20162
SM_b20163: SM_b20163 - hypothetical protein, at 180,811 to 181,980
_b20163
SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220
_b20164
SM_b20165: SM_b20165 - hypothetical protein, at 184,327 to 184,998
_b20165
SM_b20166: SM_b20166 - hypothetical protein, at 184,995 to 185,348
_b20166
Group
Condition
SM
_b20162
SM
_b20163
SM
_b20164
SM
_b20165
SM
_b20166
carbon source
5-Aminovaleric (C)
-0.3
-0.5
-0.3
-0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.3
-0.0
+0.2
-1.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.4
-0.1
-0.2
-0.3
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.3
-0.4
-0.0
-0.5
-0.5
carbon source
5-Aminovaleric (C)
-0.2
-0.3
-0.4
+0.1
-0.1
nitrogen source
L-Glutamine (N)
+0.3
-0.6
-0.0
-0.2
-0.2
stress
Nickel (II) chloride 1 mM
-0.1
-0.6
+0.2
+0.2
-0.3
r2a control
R2A control for volatile experiments
-0.0
-0.7
+0.1
-0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.5
-0.1
+0.0
+0.4
r2a control
R2A control for volatile experiments
-0.2
-0.4
-0.1
-0.1
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.3
+0.0
-0.3
+0.4
stress
Cisplatin 0.001 mg/ml
+0.2
-0.2
-0.1
-0.6
+0.4
stress
perchlorate 10 mM
-0.0
+0.3
+0.1
+0.3
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.4
+0.3
-0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.0
-0.3
+0.7
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.0
-0.5
-0.1
+0.5
nitrogen source
L-Arginine (N)
-0.3
-0.0
+0.3
-0.2
+0.4
r2a control
R2A control for volatile experiments
-0.2
+0.1
+0.1
-0.3
+0.6
nitrogen source
L-Histidine (N)
+0.1
+0.0
+0.4
+0.3
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.2
+0.4
-0.2
-0.3
stress
D-Cycloserine 0.05 mg/ml
-0.0
+0.1
+0.6
+0.3
+0.2
stress
Paraquat dichloride 0.05 mg/ml
+0.2
+0.3
+0.3
+0.0
+0.4
stress
Fusidic 0.0001 mg/ml
+0.2
+0.4
+0.1
+0.4
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.5
+0.3
-0.1
+0.3
stress
copper (II) chloride 1 mM
+0.2
+0.7
-0.1
-0.0
+0.6
nitrogen source
Cytosine (N)
+0.2
+0.1
+0.3
+0.1
+0.6
r2a control
R2A control
+0.0
+0.4
+0.3
+0.1
+0.5
stress
Sisomicin 0.004 mg/ml
+0.6
+0.3
+0.2
-0.1
+0.4
stress
Paraquat dichloride 0.2 mg/ml
+0.6
+0.4
+0.2
+0.0
+0.2
nitrogen source
L-Leucine (N)
+0.3
+0.2
+0.1
+0.4
+0.4
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