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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b22005 and SM_b20161 overlap by 4 nucleotides
SM_b20161 and SM_b20162 are separated by 193 nucleotides
SM_b20162 and SM_b20163 are separated by 44 nucleotides
SM_b20163 and SM_b20164 overlap by 4 nucleotides
SM_b22005: SM_b22005 - hypothetical protein, at 179,168 to 179,536
_b22005
SM_b20161: SM_b20161 - hypothetical protein, at 179,533 to 179,883
_b20161
SM_b20162: SM_b20162 - transcriptional regulator, at 180,077 to 180,766
_b20162
SM_b20163: SM_b20163 - hypothetical protein, at 180,811 to 181,980
_b20163
SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220
_b20164
Group
Condition
SM
_b22005
SM
_b20161
SM
_b20162
SM
_b20163
SM
_b20164
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.9
-0.4
+0.3
+0.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.2
-0.4
-0.3
+0.0
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.0
-0.2
-0.3
-0.5
-0.1
r2a control
R2A control for volatile experiments
-0.8
-0.1
-0.2
-0.4
-0.1
r2a control
R2A control for volatile experiments
-0.7
-0.3
-0.0
-0.7
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-1.2
-0.2
+0.0
+0.0
-0.1
stress
3-octanone 5.310333333 mM
-1.0
+0.0
-0.3
-0.1
+0.0
nitrogen source
L-Glutamine (N)
-0.5
-0.1
+0.3
-0.6
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.1
+0.2
-0.1
+0.1
+0.2
carbon source
Uridine (C)
-0.6
-0.4
+0.2
+0.2
-0.1
lb
LB
-1.4
+0.2
+0.3
+0.3
+0.2
carbon source
5-Aminovaleric (C)
+0.5
+0.2
-0.2
-0.3
-0.4
stress
3-octanone 0.456 mM
+0.4
+0.5
-0.4
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.2
-0.4
-0.1
-0.2
stress
1-octen-3-ol 0.5427293333 mM
+0.8
-0.3
-0.3
+0.2
-0.1
stress
D-Cycloserine 0.05 mg/ml
-0.6
+0.4
-0.0
+0.1
+0.6
stress
Paraquat dichloride 0.2 mg/ml
-0.7
-0.1
+0.6
+0.4
+0.2
carbon source
D-Glucose (C)
+0.9
-0.4
-0.1
+0.2
-0.1
stress
Paraquat dichloride 0.05 mg/ml
-0.4
+0.3
+0.2
+0.3
+0.3
nitrogen source
Cytosine (N)
-0.4
+0.7
+0.2
+0.1
+0.3
carbon source
Lactitol (C)
-0.3
+0.5
+0.3
-0.0
+0.4
stress
Chlorite 0.1 mM
+0.9
+0.2
+0.1
+0.2
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.4
+0.3
+0.5
+0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.9
+0.6
+0.2
+0.1
-0.3
nitrogen source
L-Asparagine (N)
+0.9
+0.5
-0.1
-0.2
+0.3
nitrogen source
NAG (N)
+1.2
+0.3
+0.2
-0.2
+0.1
nitrogen source
Gelatin (N)
+0.8
+0.3
+0.1
+0.2
+0.3
nitrogen source
L-Arginine (N)
+1.0
+0.9
-0.3
-0.0
+0.3
stress
Sisomicin 0.004 mg/ml
+0.6
+0.2
+0.6
+0.3
+0.2
nitrogen source
Gly-DL-Asp (N)
+1.0
+0.4
+0.2
+0.3
+0.1
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