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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20147 and SM_b20148 are separated by 224 nucleotides
SM_b20148 and SM_b20149 are separated by 3 nucleotides
SM_b20149 and SM_b20150 are separated by 317 nucleotides
SM_b20150 and SM_b20151 are separated by 65 nucleotides
SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461
_b20147
SM_b20148: SM_b20148 - transcriptional regulator, at 163,686 to 164,387
_b20148
SM_b20149: SM_b20149 - hypothetical protein, at 164,391 to 165,422
_b20149
SM_b20150: SM_b20150 - inositol monophosphatase, at 165,740 to 166,579
_b20150
SM_b20151: SM_b20151 - hypothetical protein, at 166,645 to 167,262
_b20151
Group
Condition
SM
_b20147
SM
_b20148
SM
_b20149
SM
_b20150
SM
_b20151
carbon source
L-Histidine (C)
+0.0
-2.1
-0.1
-0.0
-0.1
carbon source
L-Lysine (C)
-0.2
-1.4
-0.3
-0.2
-0.1
carbon source
L-Glutamine (C)
-0.2
-1.4
-0.2
-0.1
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-1.0
-0.5
+0.1
-0.2
carbon source
Lactitol (C)
-0.0
-1.8
-0.1
+0.2
-0.1
carbon source
Lactitol (C)
+0.1
-1.4
-0.2
-0.2
-0.0
carbon source
Lactulose (C)
+0.0
-1.4
-0.1
-0.3
+0.0
stress
Cisplatin 0.001 mg/ml
-0.3
-1.0
-0.3
+0.2
-0.3
nutrient
Min media with glucose
-0.1
-0.9
-0.4
-0.3
-0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.2
-0.7
-0.2
-0.1
-0.4
carbon source
L-Lysine (C)
-0.0
-1.3
+0.1
-0.3
-0.1
carbon source
Lactulose (C)
-0.1
-1.0
-0.4
+0.2
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
-1.4
+0.0
-0.2
+0.1
nutrient
L-Lysine
+0.1
-1.2
-0.2
-0.3
+0.2
carbon source
D-Mannose (C)
-0.3
-1.1
+0.0
+0.2
-0.1
carbon source
D-Glucose (C)
-0.1
-1.2
-0.1
+0.3
-0.1
carbon source
pipercolic (C)
+0.3
-1.5
-0.2
+0.1
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.5
-0.8
-0.2
+0.0
+0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
-0.5
-0.6
+0.1
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.8
-0.4
+0.2
-0.2
carbon source
5-Aminovaleric (C)
+0.2
-1.1
+0.2
-0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.5
-0.8
-0.1
+0.2
carbon source
methyl-beta-D-xylopyranoside (C)
-0.1
-1.0
+0.3
+0.1
-0.2
nitrogen source
Cytosine (N)
-0.5
+0.8
-0.4
-0.7
+0.2
stress
nitrate 40 mM
+0.3
-0.6
-0.5
+0.2
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
-0.4
-0.1
+0.8
-0.4
carbon source
acetate (C)
-0.5
-0.5
+0.5
+0.0
+0.2
nitrogen source
L-Asparagine (N)
+0.3
-1.1
+0.5
+0.4
+0.0
pH
LB, pH8
+0.6
-0.4
-0.3
+0.4
-0.0
stress
Chlorite 0.1 mM
+0.7
+0.1
+0.5
+0.4
-0.2
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