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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20139 and SM_b20140 are separated by 19 nucleotides
SM_b20140 and SM_b20141 overlap by 1 nucleotides
SM_b20141 and SM_b20142 overlap by 8 nucleotides
SM_b20142 and SM_b20143 are separated by 14 nucleotides
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371
_b20142
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
Group
Condition
SM
_b20139
SM
_b20140
SM
_b20141
SM
_b20142
SM
_b20143
nitrogen source
L-Arginine (N)
-1.0
-0.2
-0.4
+0.0
-1.9
nitrogen source
Cytosine (N)
-0.7
-0.4
+0.2
-0.5
-2.1
stress
1-octen-3-ol 0.6030326667 mM
+0.1
-0.1
-0.2
-0.0
-2.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.1
+0.2
-0.2
-3.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.0
-0.1
-0.1
-1.8
stress
D-Cycloserine 0.05 mg/ml
+0.6
+0.1
-0.2
-0.2
-2.2
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.1
-0.4
-0.3
-0.9
nitrogen source
L-Asparagine (N)
-0.9
-0.3
+0.0
-0.3
-0.4
stress
Chlorite 0.1 mM
+0.7
+0.2
-0.7
+0.1
-2.0
carbon source
NAG (C)
-0.3
+0.2
-0.3
-0.3
-1.0
nitrogen source
L-Glutamine (N)
-0.4
-0.4
-0.4
+0.2
-0.5
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.4
+0.2
-0.1
-0.3
-0.7
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.7
+0.2
+0.3
+0.1
-1.3
carbon source
D-Mannose (C)
+0.3
-0.2
-0.2
-0.3
-0.9
carbon source
L-Lysine (C)
+0.3
-0.1
-0.0
-0.2
-1.2
r2a control
R2A control for volatile experiments
-0.2
-0.2
+0.3
+0.2
-1.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.9
+0.3
+0.0
+0.2
-0.8
stress
Paraquat dichloride 0.2 mg/ml
+0.2
+0.1
-0.5
-0.0
-0.8
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.4
+0.5
-0.2
+0.0
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.5
+0.4
+0.2
+0.3
-1.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.7
-0.3
-0.3
-0.2
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
-0.2
+0.1
-0.2
-1.1
stress
Aluminum chloride
+0.8
-0.1
+0.0
-0.1
-1.2
nitrogen source
Gelatin (N)
+0.7
-0.1
-0.0
+0.2
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.2
+0.5
-0.0
-0.8
stress
Sisomicin 0.004 mg/ml
-0.9
-0.3
-0.2
-0.0
+1.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.3
+0.3
-0.4
-0.3
stress
copper (II) chloride 1 mM
-0.2
-0.5
-0.3
-0.1
+1.9
stress
Paraquat dichloride 0.2 mg/ml
-0.2
-0.2
+0.2
+0.4
+1.4
stress
nitrate 40 mM
+0.1
-0.1
-0.0
+0.1
+1.5
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