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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20138 and SM_b20139 are separated by 311 nucleotides
SM_b20139 and SM_b20140 are separated by 19 nucleotides
SM_b20140 and SM_b20141 overlap by 1 nucleotides
SM_b20141 and SM_b20142 overlap by 8 nucleotides
SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102
_b20138
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371
_b20142
Group
Condition
SM
_b20138
SM
_b20139
SM
_b20140
SM
_b20141
SM
_b20142
nitrogen source
L-Arginine (N)
-0.0
-1.0
-0.2
-0.4
+0.0
nitrogen source
Cytosine (N)
+0.0
-0.7
-0.4
+0.2
-0.5
nitrogen source
L-Asparagine (N)
+0.1
-0.9
-0.3
+0.0
-0.3
r2a control
R2A control for volatile experiments
-0.1
-0.6
-0.3
-0.2
-0.1
stress
Sisomicin 0.004 mg/ml
+0.2
-0.9
-0.3
-0.2
-0.0
stress
copper (II) chloride 1 mM
-0.0
-0.2
-0.5
-0.3
-0.1
r2a control
R2A control for volatile experiments
-0.4
-0.4
-0.1
-0.4
+0.2
stress
Nickel (II) chloride 1 mM
+0.3
-0.8
-0.2
-0.4
+0.1
nitrogen source
L-Glutamine (N)
+0.1
-0.4
-0.4
-0.4
+0.2
carbon source
NAG (C)
-0.1
-0.3
+0.2
-0.3
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.6
-0.2
-0.1
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.9
+0.3
+0.0
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.7
+0.2
+0.1
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
-0.4
+0.5
-0.2
+0.0
stress
Chloride 200 mM
+0.2
-0.7
+0.1
-0.1
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
-0.7
+0.2
+0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.8
-0.1
-0.3
-0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
+0.7
-0.3
-0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.6
+0.1
+0.0
-0.4
nitrogen source
Gly-DL-Asp (N)
+0.3
+0.4
-0.3
-0.3
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
-0.5
+0.2
+0.3
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.5
+0.4
+0.2
+0.3
pH
LB, pH8
+0.1
+0.7
-0.2
-0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.7
-0.2
+0.1
-0.2
stress
Chlorite 0.1 mM
+0.1
+0.7
+0.2
-0.7
+0.1
stress
perchlorate 10 mM
+0.3
+0.5
-0.2
+0.3
-0.2
stress
Aluminum chloride
+0.3
+0.8
-0.1
+0.0
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.7
+0.3
+0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.5
+0.3
-0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.6
+0.3
+0.1
+0.3
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