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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20132 and SM_b20133 overlap by 1 nucleotides
SM_b20133 and SM_b20134 are separated by 202 nucleotides
SM_b20134 and SM_b20135 are separated by 78 nucleotides
SM_b20135 and SM_b20136 are separated by 30 nucleotides
SM_b20132: SM_b20132 - dehydrogenase, at 143,977 to 146,295
_b20132
SM_b20133: SM_b20133 - hypothetical protein, at 146,295 to 147,344
_b20133
SM_b20134: SM_b20134 - permease, at 147,547 to 148,938
_b20134
SM_b20135: SM_b20135 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 149,017 to 149,649
_b20135
SM_b20136: SM_b20136 - hypothetical protein, at 149,680 to 151,053
_b20136
Group
Condition
SM
_b20132
SM
_b20133
SM
_b20134
SM
_b20135
SM
_b20136
stress
Paraquat dichloride 0.2 mg/ml
-0.2
-0.4
+0.1
-0.5
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.4
+0.1
-0.6
+0.1
carbon source
D-Fructose (C)
-0.1
-0.3
+0.1
-0.5
-0.1
stress
Nickel (II) chloride 1 mM
+0.0
-0.3
+0.1
-0.8
+0.1
stress
Paraquat dichloride 0.3 mg/ml
-0.2
+0.2
-0.0
-0.6
-0.1
nitrogen source
Cytosine (N)
+0.2
-0.2
-0.4
-0.3
+0.2
stress
Thallium(I) acetate 0.0025 mg/ml
-0.3
+0.4
-0.1
-0.2
-0.2
carbon source
L-Proline (C)
+0.0
+0.2
+0.2
-0.5
-0.2
pH
LB, pH8
-0.0
+0.2
-0.3
-0.4
+0.2
stress
Cisplatin 0.0005 mg/ml
-0.1
+0.1
+0.3
-0.3
-0.2
carbon source
D-Mannose (C)
-0.1
-0.2
+0.2
-0.3
+0.3
carbon source
acetate (C)
+0.1
-0.6
+0.2
-0.0
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.0
+0.3
-0.3
-0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
+0.3
+0.4
+0.0
carbon source
D-Ribose (C)
+0.1
+0.1
+0.4
-0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
-0.7
+0.3
+0.2
+0.2
carbon source
Xylobiose (C)
-0.1
+0.7
+0.1
-0.2
-0.2
r2a control
R2A control for volatile experiments
+0.2
+0.2
-0.1
-0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.3
-0.4
+0.3
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
+0.5
-0.3
-0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.1
+0.3
+0.2
-0.5
stress
Cisplatin 0.001 mg/ml
-0.2
+0.2
+0.6
-0.0
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.1
+0.8
+0.1
-0.1
stress
nitrate 40 mM
-0.1
-0.0
+0.5
+0.3
+0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.0
+0.7
+0.1
+0.2
-0.2
stress
Chlorite 0.1 mM
-0.1
+0.5
+0.4
-0.0
+0.0
nitrogen source
L-Histidine (N)
-0.1
+0.2
+0.5
-0.0
+0.3
stress
Aluminum chloride
+0.2
+0.6
+0.3
+0.2
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
+1.1
+0.4
+0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.4
+0.3
+0.3
+0.2
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