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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20109 and SM_b20110 overlap by 4 nucleotides
SM_b20110 and SM_b20111 overlap by 4 nucleotides
SM_b20111 and SM_b20112 overlap by 4 nucleotides
SM_b20112 and SM_b20113 are separated by 36 nucleotides
SM_b20109: SM_b20109 - peptide ABC transporter permease, at 120,284 to 121,207
_b20109
SM_b20110: SM_b20110 - oligopeptide ABC transporter permease, at 121,204 to 122,151
_b20110
SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788
_b20111
SM_b20112: SM_b20112 - hypothetical protein, at 123,785 to 124,672
_b20112
SM_b20113: SM_b20113 - dehydrogenase, at 124,709 to 125,641
_b20113
Group
Condition
SM
_b20109
SM
_b20110
SM
_b20111
SM
_b20112
SM
_b20113
r2a control
R2A control for volatile experiments
-0.3
-0.2
-0.2
-0.5
-0.5
carbon source
L-Arabinose (C)
-0.5
+0.3
-0.2
-0.2
-0.7
stress
perchlorate 10 mM
-0.3
-0.2
-0.3
-0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.8
-0.1
+0.1
-0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.5
-0.0
+0.3
+0.3
-0.9
stress
Paraquat dichloride 0.2 mg/ml
-0.4
-0.6
+0.1
-0.0
+0.2
stress
Cisplatin 0.001 mg/ml
-0.5
-0.1
-0.0
+0.5
-0.7
nitrogen source
L-Arginine (N)
-0.5
-0.0
+0.0
+0.6
-0.7
carbon source
5-Aminovaleric (C)
-0.7
+0.3
-0.3
+0.3
-0.0
stress
Paraquat dichloride 0.3 mg/ml
-0.2
+0.1
+0.1
+0.3
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.6
-0.4
+0.2
+0.6
-0.1
carbon source
Xylobiose (C)
-0.5
-0.1
+0.1
+0.4
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.4
-0.1
+0.5
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
-0.1
+0.0
+0.7
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.7
-0.4
+0.2
+0.3
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.1
-0.2
+0.5
+0.1
nitrogen source
Gelatin (N)
-0.4
+0.1
-0.4
+0.4
+0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.6
-0.5
-0.1
-0.3
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.0
-0.1
+0.4
-0.5
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.1
+0.3
+0.2
-0.7
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
-0.2
+0.3
+0.5
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.4
-0.3
+0.6
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
+0.1
-0.1
+0.4
+0.3
nitrogen source
NAG (N)
-0.7
+0.3
+0.0
+0.4
+0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.3
-0.1
-0.2
+0.6
+0.5
pH
LB, pH6
+0.1
+0.5
+0.3
+0.2
-0.3
nitrogen source
L-Glutamine (N)
+0.2
+0.2
-0.1
+0.4
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.1
-0.4
+0.7
+0.2
r2a control
R2A control for volatile experiments
+0.3
+0.5
+0.0
+0.1
+0.4
stress
Thallium(I) acetate 0.001 mg/ml
+0.3
+0.2
+0.2
+0.4
+0.2
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