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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20099 and SM_b20100 are separated by 1 nucleotides
SM_b20100 and SM_b20101 are separated by 60 nucleotides
SM_b20101 and SM_b20102 are separated by 87 nucleotides
SM_b20102 and SM_b20103 are separated by 214 nucleotides
SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759
_b20099
SM_b20100: SM_b20100 - dehydrogenase, at 108,761 to 109,747
_b20100
SM_b20101: SM_b20101 - hydroxyglutarate oxidase, at 109,808 to 111,088
_b20101
SM_b20102: SM_b20102 - acetoin catabolism regulatory protein, at 111,176 to 113,059
_b20102
SM_b20103: SM_b20103 - FAD-dependent oxidoreductase, at 113,274 to 115,076
_b20103
Group
Condition
SM
_b20099
SM
_b20100
SM
_b20101
SM
_b20102
SM
_b20103
carbon source
D-Xylose (C)
-0.2
-0.6
+0.0
-0.1
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.1
-0.3
-0.1
-0.5
+0.0
carbon source
succinate (C)
-0.1
-0.6
-0.0
-0.2
-0.1
carbon source
acetate (C)
-0.2
-0.5
-0.1
-0.1
-0.1
nitrogen source
L-Histidine (N)
-0.3
-0.7
+0.0
+0.3
-0.1
carbon source
D-Mannose (C)
-0.2
-0.6
+0.0
+0.1
-0.1
stress
Nickel (II) chloride 1 mM
+0.2
-0.4
-0.0
-0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.9
+0.4
-0.1
-0.2
carbon source
D-Mannose (C)
+0.1
-0.8
-0.1
+0.2
-0.0
stress
D-Cycloserine 0.05 mg/ml
+0.1
-0.7
+0.0
+0.1
-0.2
nitrogen source
nitrate (N)
-0.2
-0.7
+0.3
+0.1
-0.2
nitrogen source
Gelatin (N)
-0.0
-0.8
+0.0
+0.3
-0.0
stress
1-octen-3-ol 0.6030326667 mM
-0.0
-0.4
-0.4
+0.1
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
+0.2
-0.2
-0.2
-0.1
carbon source
L-Malic (C)
+0.2
-0.5
-0.2
-0.0
+0.1
carbon source
methyl-beta-D-xylopyranoside (C)
-0.3
-0.2
+0.3
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.9
-0.1
+0.3
+0.2
nitrogen source
L-Arginine (N)
+0.2
-0.3
-0.6
+0.2
+0.1
temperature
LB, 23C
+0.1
-0.4
+0.1
+0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.4
+0.2
+0.2
+0.0
nitrogen source
Uridine (N)
+0.1
-0.5
+0.2
+0.1
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
+0.6
-0.2
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.4
+0.1
+0.2
-0.0
stress
Aluminum chloride
+0.0
+0.0
+0.6
-0.4
-0.1
stress
copper (II) chloride 1 mM
-0.1
+0.4
+0.4
-0.3
-0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.4
+0.8
+0.3
-0.4
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.1
+0.3
+0.3
-0.0
-0.2
stress
Chlorite 0.1 mM
-0.0
-0.2
+0.9
+0.2
-0.1
carbon source
Xylobiose (C)
-0.1
+0.6
+0.3
+0.1
-0.2
pH
LB, pH6
-0.1
+0.6
-0.1
+0.3
+0.3
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