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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20091 and SM_b20092 are separated by 85 nucleotides
SM_b20092 and SM_b20093 are separated by 37 nucleotides
SM_b20093 and SM_b20094 overlap by 106 nucleotides
SM_b20094 and SM_b20095 are separated by 24 nucleotides
SM_b20091: SM_b20091 - hypothetical protein, at 99,186 to 99,692
_b20091
SM_b20092: SM_b20092 - hypothetical protein, at 99,778 to 100,536
_b20092
SM_b20093: SM_b20093 - hypothetical protein, at 100,574 to 101,515
_b20093
SM_b20094: SM_b20094 - phospholipase, at 101,410 to 103,182
_b20094
SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024
_b20095
Group
Condition
SM
_b20091
SM
_b20092
SM
_b20093
SM
_b20094
SM
_b20095
nitrogen source
L-Asparagine (N)
+0.4
-0.9
-0.8
-0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.8
-0.6
+0.2
+0.1
r2a control
R2A control
-0.3
-0.4
-0.4
-0.1
-0.2
pH
LB, pH6
-0.7
-0.2
+0.0
-0.2
-0.1
stress
Thallium(I) acetate 0.0025 mg/ml
-0.7
-0.1
+0.1
-0.3
-0.2
carbon source
D-Mannose (C)
-0.4
-0.3
-0.2
-0.3
+0.2
carbon source
D-Glucose (C)
-0.1
-0.6
+0.2
-0.2
-0.0
stress
Aluminum chloride
-0.4
-0.6
+0.3
+0.0
-0.0
nitrogen source
Cytosine (N)
+0.4
-0.2
-0.3
-0.0
-0.4
stress
Cisplatin 0.0005 mg/ml
-0.6
-0.3
+0.1
+0.1
+0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.7
+0.3
-0.1
-0.1
+0.0
nitrogen source
NAG (N)
-0.5
-0.3
+0.2
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.1
+0.5
+0.2
+0.0
+0.1
carbon source
L-Alanine (C)
-0.3
+0.0
+0.4
-0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
-0.7
+0.3
+0.2
+0.0
nitrogen source
L-Leucine (N)
+0.2
-1.0
+0.4
+0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-0.0
+0.3
-0.0
+0.3
carbon source
Beta-Lactose (C)
+0.3
-0.5
+0.3
-0.1
-0.1
stress
3-octanone 0.456 mM
+0.2
-0.4
+0.2
+0.3
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
+0.2
-0.2
+0.0
+0.4
stress
Nickel (II) chloride 1 mM
-0.3
+0.3
-0.4
+0.3
+0.3
carbon source
acetate (C)
-0.1
+0.3
+0.1
-0.2
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.4
+0.3
+0.1
+0.4
nitrogen source
L-Arginine (N)
-0.1
+0.3
+0.5
-0.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.7
-0.7
+0.1
+0.6
stress
Paraquat dichloride 0.3 mg/ml
+0.2
+0.7
-0.0
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.4
+0.4
+0.0
+0.5
carbon source
Lactitol (C)
+0.2
+0.6
+0.0
+0.0
+0.3
dmso control
DMSO control
+0.1
+0.6
+0.3
+0.1
+0.1
r2a control
R2A control for volatile experiments
+0.5
+0.6
+0.0
+0.3
-0.1
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