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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20081 and SM_b20082 overlap by 4 nucleotides
SM_b20082 and SM_b20083 are separated by 291 nucleotides
SM_b20083 and SM_b20084 are separated by 111 nucleotides
SM_b20084 and SM_b20085 are separated by 51 nucleotides
SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445
_b20081
SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260
_b20082
SM_b20083: SM_b20083 - hypothetical protein, at 94,552 to 94,791
_b20083
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
Group
Condition
SM
_b20081
SM
_b20082
SM
_b20083
SM
_b20084
SM
_b20085
stress
perchlorate 10 mM
+0.7
-0.5
-2.9
-0.0
N.D.
nitrogen source
L-Glutamine (N)
-0.4
-1.1
-0.2
+0.0
N.D.
r2a control
R2A control for volatile experiments
-0.4
-0.4
-0.7
-0.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.3
-1.4
+0.1
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.5
+0.0
-1.1
-0.0
N.D.
carbon source
Sucrose (C)
-0.2
-0.5
-0.6
-0.1
N.D.
carbon source
palatinose (C)
-0.3
-0.4
-0.6
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.1
-1.2
+0.2
N.D.
stress
Nickel (II) chloride 1 mM
-0.9
+0.2
-0.2
-0.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.2
-1.1
+0.0
N.D.
nitrogen source
nitrate (N)
-0.7
-1.0
+0.4
+0.3
N.D.
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.7
-0.6
+0.3
-0.0
N.D.
nutrient
Min media with glucose
+0.3
-0.6
-0.7
+0.2
N.D.
nitrogen source
Cytosine (N)
+0.0
-1.2
+0.2
+0.4
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.7
+0.4
+0.0
-0.2
N.D.
nutrient
L-Lysine
-0.2
+0.2
-0.7
+0.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.4
-1.1
-0.1
N.D.
nitrogen source
L-Arginine (N)
-1.1
+0.5
+0.3
+0.1
N.D.
stress
Chlorite 0.1 mM
+0.3
+0.5
-0.7
-0.2
N.D.
stress
Cisplatin 0.001 mg/ml
-0.4
+0.7
-0.7
+0.6
N.D.
nitrogen source
L-Leucine (N)
+0.6
-0.2
-0.3
+0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.8
-0.2
-0.4
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.9
-0.5
+0.1
+0.0
N.D.
stress
copper (II) chloride 1 mM
+0.5
+0.6
-0.5
+0.4
N.D.
stress
Paraquat dichloride 0.3 mg/ml
+0.6
+0.4
+0.4
+0.2
N.D.
pH
LB, pH6
+0.6
-0.2
+1.0
+0.2
N.D.
stress
Thallium(I) acetate 0.0025 mg/ml
+0.9
+0.1
+0.5
+0.2
N.D.
stress
Cisplatin 0.0005 mg/ml
+0.9
-0.0
+0.6
+0.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.4
+1.1
+0.6
+0.0
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
+0.9
+1.6
-0.0
N.D.
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