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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20078 and SM_b20079 are separated by 832 nucleotides
SM_b20079 and SM_b20080 are separated by 114 nucleotides
SM_b20080 and SM_b20081 are separated by 19 nucleotides
SM_b20081 and SM_b20082 overlap by 4 nucleotides
SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380
_b20078
SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431
_b20079
SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715
_b20080
SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445
_b20081
SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260
_b20082
Group
Condition
SM
_b20078
SM
_b20079
SM
_b20080
SM
_b20081
SM
_b20082
nitrogen source
L-Glutamine (N)
+0.1
-0.1
+0.2
-0.4
-1.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.1
+0.1
+0.0
-0.7
-0.6
nutrient
Min media with glucose
-0.4
-0.3
-0.1
+0.3
-0.6
nitrogen source
L-Arginine (N)
+0.5
+0.0
-1.0
-1.1
+0.5
r2a control
R2A control for volatile experiments
-0.4
-0.1
+0.3
-0.4
-0.4
nitrogen source
nitrate (N)
+0.6
+0.1
+0.1
-0.7
-1.0
stress
Nickel (II) chloride 1 mM
-0.1
-0.1
+0.4
-0.9
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.2
+0.0
+0.0
-0.7
+0.4
nitrogen source
Cytosine (N)
-0.3
+0.2
+0.9
+0.0
-1.2
stress
1-octen-3-ol 0.4933903333 mM
-0.5
-0.0
-0.3
+0.1
+0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
+0.2
-0.2
-0.5
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.1
+0.4
-0.3
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
+0.1
-0.6
+0.3
stress
Cisplatin 0.0005 mg/ml
-0.4
-0.1
-0.1
+0.9
-0.0
stress
Thallium(I) acetate 0.0025 mg/ml
-0.6
+0.1
-0.2
+0.9
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.0
-0.0
-0.0
+0.9
-0.5
nitrogen source
L-Leucine (N)
+0.4
-0.1
-0.2
+0.6
-0.2
nitrogen source
L-Histidine (N)
+0.3
+0.2
+0.4
-0.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.0
-0.3
+0.6
+0.4
stress
Fusidic 0.0001 mg/ml
+0.3
-0.0
+0.3
-0.4
+0.5
stress
Thallium(I) acetate 0.001 mg/ml
-0.5
+0.1
-0.0
+0.5
+0.7
stress
Cisplatin 0.001 mg/ml
+0.3
+0.0
+0.2
-0.4
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.0
-0.5
+0.2
+0.8
stress
perchlorate 10 mM
+0.8
-0.0
-0.0
+0.7
-0.5
stress
nitrate 40 mM
+0.0
+0.1
-0.2
+0.2
+0.8
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.5
-0.1
+0.6
+0.0
+0.9
stress
Paraquat dichloride 0.3 mg/ml
-0.1
+0.0
+0.3
+0.6
+0.4
stress
copper (II) chloride 1 mM
-0.5
+0.2
+0.3
+0.5
+0.6
stress
Cobalt chloride 0.16 mM
+0.2
+0.0
+0.4
+0.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+0.1
+0.0
+0.4
+1.1
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