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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20076 and SM_b20077 are separated by 99 nucleotides
SM_b20077 and SM_b20078 overlap by 1 nucleotides
SM_b20078 and SM_b20079 are separated by 832 nucleotides
SM_b20079 and SM_b20080 are separated by 114 nucleotides
SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981
_b20076
SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745
_b20077
SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380
_b20078
SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431
_b20079
SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715
_b20080
Group
Condition
SM
_b20076
SM
_b20077
SM
_b20078
SM
_b20079
SM
_b20080
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.3
-0.1
-0.1
-0.3
carbon source
D-Mannose (C)
-0.4
-0.4
-0.0
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.4
+0.3
-0.0
-0.5
stress
Sisomicin 0.004 mg/ml
+0.2
-0.2
-0.3
-0.2
-0.1
stress
Cisplatin 0.0005 mg/ml
-0.2
+0.2
-0.4
-0.1
-0.1
nutrient
Min media with glucose
-0.1
+0.3
-0.4
-0.3
-0.1
carbon source
Mannobiose (C)
-0.0
-0.3
+0.4
-0.1
-0.5
lb
LB
-0.3
-0.2
+0.3
-0.0
-0.3
stress
3-octanone 2.655166667 mM
+0.2
+0.0
-0.4
-0.0
-0.3
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
+0.2
-0.5
+0.1
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
-0.3
-0.2
-0.2
+0.2
stress
Chloride 200 mM
-0.3
-0.4
+0.1
+0.0
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
+0.5
-0.6
+0.1
-0.2
carbon source
L-Alanine (C)
-0.5
-0.1
+0.3
-0.1
+0.0
r2a control
R2A control for volatile experiments
+0.1
-0.2
-0.4
-0.1
+0.3
nitrogen source
L-Leucine (N)
-0.3
+0.0
+0.4
-0.1
-0.2
stress
perchlorate 10 mM
-0.7
-0.2
+0.8
-0.0
-0.0
stress
Chlorite 0.1 mM
-0.7
+0.0
+0.4
+0.1
+0.0
carbon source
Methyl beta-D-glucopyranoside (C)
-0.2
-0.2
-0.2
+0.1
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.0
-0.1
-0.5
-0.1
+0.6
nitrogen source
L-Arginine (N)
+0.3
-0.0
+0.5
+0.0
-1.0
nitrogen source
NAG (N)
-0.4
+0.2
+0.2
+0.1
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.2
+0.3
+0.2
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
+0.1
-0.4
-0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.2
+0.2
+0.2
+0.3
stress
copper (II) chloride 1 mM
-0.0
+0.3
-0.5
+0.2
+0.3
nitrogen source
nitrate (N)
-0.3
-0.2
+0.6
+0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.1
-0.3
+0.1
+0.4
nitrogen source
Cytosine (N)
-0.0
+0.2
-0.3
+0.2
+0.9
nitrogen source
L-Histidine (N)
+0.1
+0.1
+0.3
+0.2
+0.4
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