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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20071 and SM_b20072 are separated by 471 nucleotides
SM_b20072 and SM_b20073 are separated by 162 nucleotides
SM_b20073 and SM_b20074 are separated by 195 nucleotides
SM_b20074 and SM_b20075 are separated by 48 nucleotides
SM_b20071: SM_b20071 - efflux protein, at 79,574 to 80,767
_b20071
SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168
_b20072
SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188
_b20073
SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626
_b20074
SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866
_b20075
Group
Condition
SM
_b20071
SM
_b20072
SM
_b20073
SM
_b20074
SM
_b20075
stress
Chlorite 0.1 mM
-0.1
-0.8
-0.1
-1.0
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.1
-0.2
-0.8
-1.3
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.4
+0.3
-0.4
-1.2
pH
LB, pH8
+0.2
-0.4
-0.1
-0.2
-1.4
stress
D-Cycloserine 0.05 mg/ml
+0.2
+0.0
+0.1
-1.0
-1.2
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
-0.1
-0.1
-0.0
-1.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-1.1
-0.1
-0.1
-0.6
lb
LB
-0.1
-0.6
+0.0
-0.2
-0.7
r2a control
R2A control
+0.1
+0.0
-0.2
-0.5
-0.7
r2a control
R2A control for volatile experiments
+0.1
+0.0
+0.1
-0.4
-1.0
carbon source
Sucrose (C)
+0.2
-0.1
-0.4
+0.1
-0.7
carbon source
D-Leucrose (C)
+0.1
-0.4
-0.1
+0.3
-0.7
carbon source
Beta-Lactose (C)
+0.3
-0.3
-0.4
+0.2
-0.5
carbon source
acetate (C)
+0.0
-0.2
-0.4
-0.8
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.1
-0.3
+0.2
-0.6
carbon source
Beta-Lactose (C)
+0.1
+0.2
-0.2
+0.3
-0.8
carbon source
L-Alanine (C)
-0.2
-0.4
+0.2
-0.6
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.6
-0.4
+0.1
+0.5
nitrogen source
NAG (N)
-0.1
+0.5
+0.1
-0.8
+0.2
stress
Aluminum chloride
-0.0
-0.0
+0.2
-0.8
+0.7
carbon source
D-Xylose (C)
+0.1
-0.4
-0.1
-0.1
+0.8
carbon source
D-Mannose (C)
-0.2
-0.1
+0.0
-0.3
+0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.4
+0.3
-0.3
+0.8
carbon source
succinate (C)
+0.1
-0.3
+0.1
-0.2
+0.9
nitrogen source
Uridine (N)
-0.2
+0.6
+0.2
-0.3
+0.4
nitrogen source
L-Serine (N)
+0.0
+0.3
-0.4
+0.0
+1.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.2
+0.0
+0.5
+0.7
nitrogen source
L-Glutamine (N)
-0.1
+0.1
+0.4
-0.2
+1.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
-0.2
+0.2
+0.3
+0.8
stress
copper (II) chloride 1 mM
-0.1
+0.3
+0.7
+0.3
+0.4
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