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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20062 and SM_b20063 overlap by 11 nucleotides
SM_b20063 and SM_b20064 overlap by 79 nucleotides
SM_b20064 and SM_b20065 are separated by 551 nucleotides
SM_b20065 and SM_b20066 are separated by 166 nucleotides
SM_b20062: SM_b20062 - hypothetical protein, at 72,518 to 72,766
_b20062
SM_b20063: SM_b20063 - hypothetical protein, at 72,756 to 73,052
_b20063
SM_b20064: SM_b20064 - hypothetical protein, at 72,974 to 73,420
_b20064
SM_b20065: SM_b20065 - hypothetical protein, at 73,972 to 74,370
_b20065
SM_b20066: SM_b20066 - hypothetical protein, at 74,537 to 74,722
_b20066
Group
Condition
SM
_b20062
SM
_b20063
SM
_b20064
SM
_b20065
SM
_b20066
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.5
-0.3
N.D.
N.D.
stress
Cisplatin 0.001 mg/ml
N.D.
-0.7
-0.1
N.D.
N.D.
nitrogen source
L-Leucine (N)
N.D.
-0.3
-0.4
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.4
-0.4
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.5
-0.2
N.D.
N.D.
nitrogen source
Uridine (N)
N.D.
-0.2
-0.5
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
N.D.
-0.5
-0.1
N.D.
N.D.
stress
3-octanone 2.655166667 mM
N.D.
-0.4
-0.2
N.D.
N.D.
stress
Thallium(I) acetate 0.0025 mg/ml
N.D.
-0.2
-0.4
N.D.
N.D.
carbon source
L-Lactate (C)
N.D.
-0.3
-0.2
N.D.
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
N.D.
-0.2
-0.4
N.D.
N.D.
dmso control
DMSO control
N.D.
-0.0
-0.5
N.D.
N.D.
r2a control
R2A control for volatile experiments
N.D.
-0.4
-0.2
N.D.
N.D.
lb no stress control
LB no stress control
N.D.
-0.3
-0.2
N.D.
N.D.
stress
1-octen-3-ol 0.5427293333 mM
N.D.
-0.3
-0.2
N.D.
N.D.
stress
1-octen-3-ol 0.5427293333 mM
N.D.
-0.2
-0.3
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
N.D.
-0.1
-0.4
N.D.
N.D.
stress
1-octen-3-ol 0.4933903333 mM
N.D.
-0.2
-0.3
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
N.D.
-0.5
+0.2
N.D.
N.D.
stress
Cisplatin 0.0005 mg/ml
N.D.
-0.4
+0.1
N.D.
N.D.
temperature
LB, 23C
N.D.
-0.3
+0.2
N.D.
N.D.
carbon source
pyruvate (C)
N.D.
-0.3
+0.3
N.D.
N.D.
nitrogen source
nitrate (N)
N.D.
+0.2
-0.2
N.D.
N.D.
stress
sodium fluoride 100 mM
N.D.
+0.3
+0.1
N.D.
N.D.
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
N.D.
+0.2
+0.3
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
N.D.
+0.3
+0.2
N.D.
N.D.
carbon source
succinate (C)
N.D.
+0.3
+0.3
N.D.
N.D.
carbon source
D-Ribose (C)
N.D.
+0.4
+0.2
N.D.
N.D.
carbon source
D-Ribose (C)
N.D.
+0.3
+0.3
N.D.
N.D.
carbon source
5-Aminovaleric (C)
N.D.
+0.4
+0.3
N.D.
N.D.
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