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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20039 and SM_b20040 are separated by 81 nucleotides
SM_b20040 and SM_b20041 are separated by 190 nucleotides
SM_b20041 and SM_b20042 are separated by 22 nucleotides
SM_b20042 and SM_b20043 are separated by 373 nucleotides
SM_b20039: SM_b20039 - transcriptional regulator, at 49,146 to 50,570
_b20039
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233
_b20041
SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413
_b20042
SM_b20043: SM_b20043 - hypothetical protein, at 53,787 to 54,629
_b20043
Group
Condition
SM
_b20039
SM
_b20040
SM
_b20041
SM
_b20042
SM
_b20043
stress
D-Cycloserine 0.05 mg/ml
-2.2
-1.3
+0.1
+0.1
+1.0
nitrogen source
nitrate (N)
-0.4
-0.5
-0.0
-1.2
-0.1
pH
LB, pH8
-0.2
-0.3
-0.0
-0.7
-0.7
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-0.5
-0.0
-1.5
+0.3
stress
Aluminum chloride
+0.2
+0.1
-0.0
+0.1
-2.1
pH
LB, pH8
-0.0
+0.1
-0.1
-0.6
-1.0
nitrogen source
NAG (N)
+0.3
-0.2
-1.1
-0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
+0.5
-0.9
-0.5
-0.3
stress
copper (II) chloride 1 mM
+0.0
-0.6
+0.0
-1.0
+0.5
nitrogen source
Uridine (N)
+0.3
+0.1
-0.4
-1.1
+0.0
stress
Sisomicin 0.004 mg/ml
-0.1
+0.5
-0.4
-0.4
-0.5
nitrogen source
L-Arginine (N)
-0.2
+0.3
-0.8
-0.6
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
-0.0
-0.9
-1.0
+0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
-0.5
+0.2
-0.8
+0.2
nitrogen source
L-Asparagine (N)
-0.2
+0.7
-0.2
-0.8
+0.1
stress
perchlorate 10 mM
+0.1
-0.5
+0.0
-0.7
+1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.4
-0.0
-1.2
+1.3
lb
LB
+0.0
-0.2
+0.2
-0.6
+0.8
pH
LB, pH6
+0.0
-0.2
-0.4
-0.4
+1.4
pH
LB, pH6
+0.2
-0.3
-0.1
-0.6
+1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.4
-0.5
+0.1
+1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.3
-0.7
+0.6
+1.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.1
+0.2
-0.6
+1.4
stress
copper (II) chloride 1 mM
-0.1
+0.7
+0.1
+0.3
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.7
+0.5
-0.8
+1.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.7
-0.2
-0.6
+1.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.1
+0.1
+0.3
+1.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.1
+0.3
+0.2
+1.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.6
-0.3
+0.4
+1.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.4
+0.1
+0.6
+2.0
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