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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20033 and SM_b20034 are separated by 296 nucleotides
SM_b20034 and SM_b20035 are separated by 10 nucleotides
SM_b20035 and SM_b20036 are separated by 60 nucleotides
SM_b20036 and SM_b20037 are separated by 79 nucleotides
SM_b20033: SM_b20033 - transcriptional regulator, at 43,775 to 44,437
_b20033
SM_b20034: SM_b20034 - ABC transporter, at 44,734 to 45,297
_b20034
SM_b20035: SM_b20035 - ABC transporter permease, at 45,308 to 46,588
_b20035
SM_b20036: SM_b20036 - ABC transporter substrate-binding protein, at 46,649 to 47,665
_b20036
SM_b20037: SM_b20037 - shikimate 5-dehydrogenase, at 47,745 to 48,605
_b20037
Group
Condition
SM
_b20033
SM
_b20034
SM
_b20035
SM
_b20036
SM
_b20037
nitrogen source
Gelatin (N)
-0.4
-0.5
-0.2
-0.4
-0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.7
-0.0
-0.7
-0.5
+0.1
nitrogen source
Gly-DL-Asp (N)
-0.4
-0.3
-0.1
-0.5
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.5
-0.3
-0.2
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-1.0
-0.1
-0.1
-0.2
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.5
-0.5
-0.3
-0.1
-0.1
carbon source
NAG (C)
-0.0
+0.0
-0.3
-0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
+0.4
-0.1
-0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.6
-0.5
-0.2
+0.3
r2a control
R2A control
+0.1
-0.5
+0.2
-0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.3
+0.0
-0.4
-0.3
stress
Sisomicin 0.004 mg/ml
-0.5
-0.5
+0.4
-0.2
+0.4
carbon source
Beta-Lactose (C)
+0.3
-0.2
+0.3
-0.2
-0.4
nitrogen source
L-Serine (N)
-0.3
+0.3
+0.2
+0.1
-0.5
stress
Thallium(I) acetate 0.001 mg/ml
-0.5
+0.3
+0.2
+0.1
-0.2
r2a control
R2A control for volatile experiments
-0.3
+0.2
-0.2
-0.2
+0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.3
-0.3
+0.6
-0.3
+0.2
nitrogen source
nitrate (N)
-0.2
+0.2
+0.3
+0.0
-0.4
carbon source
m-Inositol (C)
+0.6
-0.0
+0.1
-0.3
-0.3
carbon source
D-Mannitol (C)
+0.3
-0.5
+0.1
+0.1
+0.1
nitrogen source
L-Leucine (N)
-0.0
+0.3
+0.5
-0.3
-0.3
nitrogen source
L-Glutamine (N)
+0.0
+0.4
+0.3
+0.0
-0.5
nitrogen source
Cytosine (N)
-0.1
+0.7
-0.3
-0.1
+0.2
lb
LB
-0.3
+0.5
+0.1
-0.1
+0.2
stress
copper (II) chloride 1 mM
+0.4
+0.3
+0.1
+0.0
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.2
+0.2
+0.0
-0.4
nutrient
L-Histidine
+0.3
+0.3
+0.1
+0.3
-0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.4
-0.2
+0.4
+0.1
+0.1
stress
Cisplatin 0.001 mg/ml
+0.1
+0.4
+0.5
+0.1
+0.2
nutrient
L-Lysine
+0.4
+0.2
+0.2
+0.1
+0.4
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