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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20030 and SM_b20031 are separated by 25 nucleotides
SM_b20031 and SM_b20032 are separated by 96 nucleotides
SM_b20032 and SM_b20033 are separated by 389 nucleotides
SM_b20033 and SM_b20034 are separated by 296 nucleotides
SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280
_b20030
SM_b20031: SM_b20031 - hypothetical protein, at 42,306 to 42,554
_b20031
SM_b20032: SM_b20032 - hypothetical protein, at 42,651 to 43,385
_b20032
SM_b20033: SM_b20033 - transcriptional regulator, at 43,775 to 44,437
_b20033
SM_b20034: SM_b20034 - ABC transporter, at 44,734 to 45,297
_b20034
Group
Condition
SM
_b20030
SM
_b20031
SM
_b20032
SM
_b20033
SM
_b20034
stress
Sisomicin 0.004 mg/ml
-0.6
-0.8
+0.3
-0.5
-0.5
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.9
-0.2
-0.5
-0.1
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
-0.3
-0.9
-0.1
-0.2
-0.3
nitrogen source
L-Histidine (N)
-0.3
-1.1
-0.1
-0.3
+0.1
nitrogen source
NAG (N)
-0.2
-0.6
-0.3
-0.1
-0.2
nitrogen source
Gelatin (N)
+0.1
-0.8
+0.1
-0.4
-0.5
stress
perchlorate 10 mM
-0.6
-1.0
-0.2
-0.1
+0.3
nitrogen source
L-Leucine (N)
-0.2
-1.1
-0.3
-0.0
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
-0.6
+0.1
-0.5
-0.5
stress
Thallium(I) acetate 0.0025 mg/ml
+0.0
-1.5
-0.2
-0.0
+0.5
carbon source
Protocatechuic Acid (C)
+0.3
-0.5
-0.3
-0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.3
-0.1
-0.7
+0.4
nitrogen source
Cytosine (N)
-0.0
-1.3
+0.0
-0.1
+0.7
stress
copper (II) chloride 1 mM
-0.6
-0.7
-0.2
+0.4
+0.3
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
-0.5
+0.2
-0.5
+0.3
r2a control
R2A control
-0.1
-0.6
+0.3
+0.1
-0.5
stress
Paraquat dichloride 0.2 mg/ml
-0.0
-0.7
-0.2
+0.1
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.5
-0.4
+0.2
-0.7
-0.0
carbon source
methyl-beta-D-xylopyranoside (C)
+0.5
+0.1
-0.3
-0.1
-0.5
carbon source
D-Glucose (C)
+0.4
-0.5
-0.0
+0.2
-0.3
lb
LB
-0.4
+0.3
-0.0
-0.3
+0.5
carbon source
L-Alanine (C)
-0.0
+0.8
-0.2
-0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
-0.3
-0.2
+0.2
-0.6
carbon source
5-Aminovaleric (C)
+0.3
+0.4
-0.2
+0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.1
+0.4
+0.0
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.5
-0.3
+0.6
+0.2
nutrient
L-Lysine
+0.6
+0.4
+0.1
+0.4
+0.2
nutrient
L-Histidine
+0.5
+0.6
-0.1
+0.2
+0.5
nutrient
L-Lysine
+0.4
+0.7
+0.0
+0.4
+0.2
nutrient
L-Histidine
+0.4
+1.1
+0.0
+0.3
+0.3
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