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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20026 and SM_b20027 are separated by 12 nucleotides
SM_b20027 and SM_b20028 are separated by 63 nucleotides
SM_b20028 and SM_b20029 are separated by 439 nucleotides
SM_b20029 and SM_b20030 overlap by 1 nucleotides
SM_b20026: SM_b20026 - hypothetical protein, at 37,331 to 37,792
_b20026
SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310
_b20027
SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510
_b20028
SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423
_b20029
SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280
_b20030
Group
Condition
SM
_b20026
SM
_b20027
SM
_b20028
SM
_b20029
SM
_b20030
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-3.3
-0.1
+0.1
+0.2
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-1.7
-0.3
-0.1
-0.5
+0.2
stress
Cisplatin 0.001 mg/ml
-1.8
+0.1
-0.3
-0.0
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-1.5
+0.3
+0.1
-0.8
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
-0.1
+0.2
-0.3
-0.1
carbon source
succinate (C)
-1.8
+0.1
+0.0
-0.0
-0.1
stress
nitrate 40 mM
-1.0
+0.1
-0.4
-0.3
-0.2
carbon source
methyl-beta-D-xylopyranoside (C)
-1.4
-0.1
-0.1
-0.3
+0.2
stress
Nickel (II) chloride 1 mM
-1.2
-0.0
+0.0
-0.2
-0.1
carbon source
succinate (C)
-0.6
-0.1
+0.0
-0.7
-0.2
stress
copper (II) chloride 1 mM
-0.3
+0.1
+0.1
-0.7
-0.6
dmso control
DMSO control
-1.7
-0.1
+0.1
+0.1
+0.2
stress
Chlorite 0.1 mM
-1.0
+0.1
-0.1
-0.4
+0.1
carbon source
5-Aminovaleric (C)
-1.0
-0.2
-0.0
+0.1
+0.3
carbon source
D-Ribose (C)
-0.9
+0.0
+0.1
-0.2
+0.3
stress
Fusidic 0.0001 mg/ml
-0.6
+0.1
+0.1
+0.4
-0.5
carbon source
D-Cellobiose (C)
-0.8
-0.1
-0.1
+0.2
+0.2
carbon source
Xylobiose (C)
-0.7
-0.1
+0.0
-0.2
+0.5
pH
LB, pH7
-0.4
-0.1
-0.0
+0.7
-0.3
carbon source
Beta-Lactose (C)
-0.7
+0.1
-0.1
+0.3
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.6
-0.3
-0.2
-0.7
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
-0.2
+0.1
-0.5
-0.1
carbon source
L-Fucose (C)
+0.9
-0.1
-0.1
-0.1
-0.5
nutrient
L-Histidine
-0.7
+0.2
+0.1
+0.0
+0.5
pH
LB, pH7
+0.8
+0.1
+0.1
-0.1
-0.5
lb
LB
+1.1
+0.0
+0.1
-0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
-0.1
+0.2
+0.5
+1.1
nitrogen source
L-Glutamine (N)
+0.7
+0.1
+0.0
+0.4
+0.2
nitrogen source
L-Serine (N)
+0.6
+0.0
+0.1
+0.5
+0.3
nitrogen source
L-Arginine (N)
+1.0
+0.6
+0.2
-0.3
+0.2
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