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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20023 and SM_b20024 are separated by 16 nucleotides
SM_b20024 and SM_b20025 are separated by 249 nucleotides
SM_b20025 and SM_b20026 are separated by 206 nucleotides
SM_b20026 and SM_b20027 are separated by 12 nucleotides
SM_b20023: SM_b20023 - hypothetical protein, at 31,301 to 34,918
_b20023
SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897
_b20024
SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124
_b20025
SM_b20026: SM_b20026 - hypothetical protein, at 37,331 to 37,792
_b20026
SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310
_b20027
Group
Condition
SM
_b20023
SM
_b20024
SM
_b20025
SM
_b20026
SM
_b20027
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
+0.1
-3.3
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.2
+0.1
-1.7
-0.3
stress
Cisplatin 0.001 mg/ml
-0.1
-0.2
-0.1
-1.8
+0.1
dmso control
DMSO control
+0.0
+0.0
+0.1
-1.7
-0.1
carbon source
methyl-beta-D-xylopyranoside (C)
-0.1
-0.3
+0.2
-1.4
-0.1
carbon source
succinate (C)
-0.0
+0.0
+0.2
-1.8
+0.1
stress
Nickel (II) chloride 1 mM
-0.1
-0.4
+0.4
-1.2
-0.0
stress
1-octen-3-ol 0.4933903333 mM
-0.1
-0.1
+0.0
-1.1
+0.0
carbon source
acetate (C)
-0.0
-0.2
-0.1
-1.0
+0.1
stress
nitrate 40 mM
+0.1
-0.5
+0.2
-1.0
+0.1
carbon source
5-Aminovaleric (C)
-0.1
+0.1
+0.3
-1.0
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.2
+0.2
-0.2
-1.5
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.4
+0.5
-1.5
-0.1
stress
Chlorite 0.1 mM
-0.0
+0.1
+0.3
-1.0
+0.1
carbon source
L-Alanine (C)
-0.1
-0.2
+0.7
-0.8
-0.0
carbon source
D-Ribose (C)
-0.0
+0.2
+0.3
-0.9
+0.0
carbon source
Lactitol (C)
+0.0
-0.1
+0.4
-0.8
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.2
+0.5
-0.9
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.4
+0.2
-0.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.2
+0.0
+0.9
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.0
-0.4
+0.5
+0.6
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.4
+0.4
-0.6
+0.2
pH
LB, pH8
+0.1
+0.2
+0.6
-0.5
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+0.1
-0.3
+0.5
+0.5
carbon source
L-Fucose (C)
+0.0
+0.2
-0.2
+0.9
-0.1
nitrogen source
L-Glutamine (N)
-0.2
-0.2
+0.3
+0.7
+0.1
lb
LB
+0.1
+0.1
+0.5
+0.6
+0.1
lb
LB
-0.0
-0.0
+0.4
+1.1
+0.0
nitrogen source
L-Arginine (N)
-0.0
-0.5
+0.5
+1.0
+0.6
pH
LB, pH6
+0.1
+0.2
+0.5
+0.9
-0.0
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