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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20021 and SM_b20022 are separated by 647 nucleotides
SM_b20022 and SM_b20023 are separated by 76 nucleotides
SM_b20023 and SM_b20024 are separated by 16 nucleotides
SM_b20024 and SM_b20025 are separated by 249 nucleotides
SM_b20021: SM_b20021 - transcriptional regulator, at 29,540 to 30,010
_b20021
SM_b20022: SM_b20022 - hypothetical protein, at 30,658 to 31,224
_b20022
SM_b20023: SM_b20023 - hypothetical protein, at 31,301 to 34,918
_b20023
SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897
_b20024
SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124
_b20025
Group
Condition
SM
_b20021
SM
_b20022
SM
_b20023
SM
_b20024
SM
_b20025
stress
copper (II) chloride 1 mM
-4.8
+0.3
+0.2
+0.2
+0.0
stress
Chlorite 0.1 mM
-3.7
-0.2
-0.0
+0.1
+0.3
stress
Paraquat dichloride 0.2 mg/ml
-2.4
-1.0
-0.0
-0.2
+0.3
stress
Paraquat dichloride 0.3 mg/ml
-2.6
-0.3
-0.0
+0.1
+0.1
r2a control
R2A control for volatile experiments
-1.7
-0.3
+0.1
-0.1
+0.1
carbon source
5-Aminovaleric (C)
-1.6
-0.2
-0.0
-0.0
-0.1
stress
Fusidic 0.0001 mg/ml
-2.1
+0.0
+0.2
-0.1
+0.0
carbon source
L-Lysine (C)
-1.6
-0.3
+0.0
+0.1
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-1.4
-0.3
-0.0
+0.1
-0.0
temperature
LB, 23C
-1.5
-0.3
+0.0
+0.1
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.5
+0.3
-0.2
+0.1
-0.3
nitrogen source
NAG (N)
-1.5
-0.2
-0.1
+0.2
+0.1
stress
Thallium(I) acetate 0.001 mg/ml
-1.6
-0.1
-0.0
-0.0
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.1
-0.1
+0.1
+0.6
-0.1
stress
Nickel (II) chloride 0.5 mM
-1.3
-0.3
-0.0
+0.2
-0.0
carbon source
methyl-beta-D-xylopyranoside (C)
-1.3
+0.3
-0.1
-0.3
+0.2
lb
LB
-1.4
+0.2
+0.0
+0.1
+0.1
nitrogen source
L-Asparagine (N)
-0.8
+0.4
+0.0
-0.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.0
-0.3
+0.0
-0.1
+0.5
carbon source
L-Alanine (C)
-0.7
-0.2
-0.1
-0.2
+0.7
pH
LB, pH6
-0.7
+0.3
-0.0
-0.3
+0.4
stress
Nickel (II) chloride 1 mM
+0.4
-0.5
-0.1
-0.4
+0.4
nitrogen source
L-Histidine (N)
-1.0
+0.5
-0.0
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-1.0
+0.2
+0.1
+0.1
nitrogen source
L-Arginine (N)
-0.3
+0.5
-0.0
-0.5
+0.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+1.3
-0.7
-0.1
-0.2
+0.1
stress
perchlorate 10 mM
-0.8
+0.4
+0.1
+0.1
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.2
-0.2
+0.0
+0.0
+0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.5
+0.6
+0.2
+0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+2.0
-0.4
-0.1
+0.4
+0.5
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