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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20011 and SM_b20012 are separated by 31 nucleotides
SM_b20012 and SM_b20013 are separated by 55 nucleotides
SM_b20013 and SM_b20014 are separated by 53 nucleotides
SM_b20014 and SM_b20015 are separated by 13 nucleotides
SM_b20011: SM_b20011 - hypothetical protein, at 15,669 to 16,448
_b20011
SM_b20012: SM_b20012 - hypothetical protein, at 16,480 to 19,023
_b20012
SM_b20013: SM_b20013 - hypothetical protein, at 19,079 to 20,323
_b20013
SM_b20014: SM_b20014 - transcriptional regulator, at 20,377 to 21,378
_b20014
SM_b20015: SM_b20015 - sugar ABC transporter permease, at 21,392 to 22,348
_b20015
Group
Condition
SM
_b20011
SM
_b20012
SM
_b20013
SM
_b20014
SM
_b20015
stress
Thallium(I) acetate 0.0025 mg/ml
-0.8
-0.2
-0.0
-0.2
-0.4
stress
Chlorite 0.1 mM
-0.9
-0.3
+0.1
-0.1
-0.4
nitrogen source
L-Arginine (N)
-0.1
-0.1
-0.5
-0.5
-0.3
stress
copper (II) chloride 1 mM
+0.2
-0.3
-0.3
-0.0
-1.1
stress
Cisplatin 0.0005 mg/ml
-0.5
-0.2
+0.1
-0.1
-0.5
stress
nitrate 40 mM
-0.2
-0.3
+0.0
-0.2
-0.7
pH
LB, pH8
-0.4
-0.1
-0.2
-0.4
-0.1
stress
Aluminum chloride
-1.1
-0.2
-0.0
-0.0
+0.1
stress
Nickel (II) chloride 1 mM
-0.5
-0.1
-0.2
+0.1
-0.3
nitrogen source
NAG (N)
-0.8
-0.1
+0.2
-0.1
-0.3
stress
3-octanone 0.456 mM
-0.7
-0.1
+0.0
+0.3
-0.3
nitrogen source
L-Glutamine (N)
+0.0
+0.0
-0.1
+0.2
-0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-0.0
-0.2
+0.3
-0.3
nitrogen source
L-Histidine (N)
-0.3
-0.0
+0.3
+0.1
-0.6
stress
copper (II) chloride 1 mM
+0.4
+0.1
-0.1
-0.0
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.2
+0.4
+0.1
-0.6
carbon source
D-Leucrose (C)
-0.9
+0.0
+0.3
+0.3
-0.1
carbon source
D-Glucose (C)
-0.4
-0.0
+0.3
+0.3
-0.2
pH
LB, pH6
+0.0
+0.2
+0.3
+0.4
-0.8
nitrogen source
L-Leucine (N)
+0.2
-0.1
+0.1
+0.4
-0.6
nutrient
L-Lysine
+0.4
+0.1
-0.3
+0.1
-0.3
carbon source
Protocatechuic Acid (C)
+0.7
+0.0
+0.2
-0.0
-0.7
stress
perchlorate 10 mM
+0.4
+0.3
+0.1
-0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+0.1
-0.2
+0.1
-0.5
carbon source
5-Aminovaleric (C)
+0.7
-0.2
+0.1
-0.1
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.5
-0.2
-0.0
-0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.1
+0.2
-0.0
-0.4
carbon source
D-Arabinose (C)
+0.4
-0.2
+0.2
+0.4
-0.3
carbon source
pipercolic (C)
+0.8
-0.2
-0.0
-0.2
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.1
-0.1
+0.8
-0.4
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