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Cofit
Fitness for 5 genes in
Synechocystis sp000284455 PCC 6803
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SGL_RS04685 and SGL_RS04690 are separated by 185 nucleotides
SGL_RS04690 and SGL_RS04695 are separated by 236 nucleotides
SGL_RS04695 and SGL_RS20210 are separated by 254 nucleotides
SGL_RS20210 and SGL_RS20215 overlap by 7 nucleotides
SGL_RS04685: SGL_RS04685 - molecular chaperone DnaK, at 600,942 to 603,257
_RS04685
SGL_RS04690: SGL_RS04690 - serine hydroxymethyltransferase, at 603,443 to 604,726
_RS04690
SGL_RS04695: SGL_RS04695 - IS1 family transposase, at 604,963 to 605,286
_RS04695
SGL_RS20210: SGL_RS20210 - IS630 family transposase, at 605,541 to 606,035
_RS20210
SGL_RS20215: SGL_RS20215 - IS630 transposase-related protein, at 606,029 to 606,328
_RS20215
Group
Condition
SGL
_RS04685
SGL
_RS04690
SGL
_RS04695
SGL
_RS20210
SGL
_RS20215
nitrogen source
nitrate (N)
N.D.
N.D.
-0.6
N.D.
N.D.
nitrogen source
L-Glutamic Acid Monosodium Salt Monohydrate (N); from biofilm
N.D.
N.D.
-0.6
N.D.
N.D.
no stress control
no stress control
N.D.
N.D.
-0.5
N.D.
N.D.
control
control
N.D.
N.D.
-0.4
N.D.
N.D.
nitrogen source
L-Glutamic Acid Monosodium Salt Monohydrate (N)
N.D.
N.D.
-0.4
N.D.
N.D.
stress
Manganese (II) chloride tetrahydrate 100 uM
N.D.
N.D.
-0.4
N.D.
N.D.
nitrogen source
growth in full media and 10 mM glucose= photoheterotrophic growth
N.D.
N.D.
-0.3
N.D.
N.D.
nitrogen source
ClNH4 10 mM as N source, buffered with 20 mM TES pH8 but diluted to prevent light attenuation
N.D.
N.D.
+0.3
N.D.
N.D.
light_bubbling
high light; bubbling
N.D.
N.D.
+0.3
N.D.
N.D.
metal stress
growth in full media supplemented with 5 .M Cl2Co but diluted to prevent light attenuation
N.D.
N.D.
+0.3
N.D.
N.D.
light_bubbling
medium light; bubbling
N.D.
N.D.
+0.4
N.D.
N.D.
carbon dioxide
growth in full media bubbled with ambient air
N.D.
N.D.
+0.4
N.D.
N.D.
no stress control
no stress control
N.D.
N.D.
+0.4
N.D.
N.D.
metal stress
growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
N.D.
N.D.
+0.4
N.D.
N.D.
carbon dioxide
growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with ambient air but diluted to prevent light attenuation
N.D.
N.D.
+0.4
N.D.
N.D.
light_bubbling
high light; bubbling
N.D.
N.D.
+0.4
N.D.
N.D.
light_bubbling
low light; bubbling
N.D.
N.D.
+0.4
N.D.
N.D.
growth in full media
N.D.
N.D.
+0.4
N.D.
N.D.
metal stress
growth in full media supplemented with 3 .M CuSO4
N.D.
N.D.
+0.4
N.D.
N.D.
metal stress
growth in full media supplemented with 5mM sodum metaarsenite
N.D.
N.D.
+0.5
N.D.
N.D.
nitrogen source
Na NO3 10 mM as N source, buffered with 20 mM TES pH8 but diluted to prevent light attenuation
N.D.
N.D.
+0.5
N.D.
N.D.
growth in full media but diluted to prevent light attenuation
N.D.
N.D.
+0.5
N.D.
N.D.
metal stress
growth in full media supplemented with 300 .M BCSA to remove any trace of Cu
N.D.
N.D.
+0.5
N.D.
N.D.
stress
D-Sorbitol 500 mM
N.D.
N.D.
+0.5
N.D.
N.D.
nitrogen source
ClNH4 10 mM as N source, buffered with 20 mM TES pH8
N.D.
N.D.
+0.6
N.D.
N.D.
nitrogen source
Arg 10 mM as N source, buffered with 20 mM TES pH8
N.D.
N.D.
+0.6
N.D.
N.D.
light_bubbling
medium light; bubbling
N.D.
N.D.
+0.6
N.D.
N.D.
photoheterotrophic
growth in full media and 10 mM glucose= photoheterotrophic growth but diluted to prevent slight attenuation and replinshing of glucose
N.D.
N.D.
+0.6
N.D.
N.D.
light_bubbling
high light; bubbling
N.D.
N.D.
+0.7
N.D.
N.D.
light_bubbling
high light; bubbling
N.D.
N.D.
+1.0
N.D.
N.D.
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