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Fitness for 5 genes in
Mycobacterium tuberculosis H37Rv
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rv0527 and Rv0528 are separated by 32 nucleotides
Rv0528 and Rv0529 overlap by 4 nucleotides
Rv0529 and Rv0530 are separated by 41 nucleotides
Rv0530 and Rv0530A overlap by 4 nucleotides
Rv0527: Rv0527 - Possible cytochrome C-type biogenesis protein CcdA, at 617,493 to 618,272
Rv0527
Rv0528: Rv0528 - Probable conserved transmembrane protein, at 618,305 to 619,894
Rv0528
Rv0529: Rv0529 - Possible cytochrome C-type biogenesis protein CcsA, at 619,891 to 620,865
Rv0529
Rv0530: Rv0530 - Conserved protein, at 620,907 to 622,124
Rv0530
Rv0530A: Rv0530A - Conserved protein, at 622,121 to 622,282
Rv0530A
Group
Condition
Rv0527
Rv0528
Rv0529
Rv0530
Rv0530A
stress
7H9 with Hygromycin B 0.0095 mM
N.D.
N.D.
N.D.
-0.1
-0.9
carbon source
D-Trehalose 10 mM (C)
N.D.
N.D.
N.D.
-0.2
-0.6
nitrogen source
L-Serine 10 mM (N)
N.D.
N.D.
N.D.
+0.1
-0.8
stress
7H9 with Dimethyl Sulfoxide 1 vol%
N.D.
N.D.
N.D.
-0.2
-0.5
carbon source
L-Lactate 10 mM (C)
N.D.
N.D.
N.D.
-0.1
-0.5
stress
7H9 with Meropenem 9.6 ug/mL
N.D.
N.D.
N.D.
-0.1
-0.5
stress
7H9 with Hygromycin B 0.0095 mM
N.D.
N.D.
N.D.
-0.2
-0.5
stress
7H9 with Sulfamethizole 0.026 mM
N.D.
N.D.
N.D.
-0.3
-0.2
nitrogen source
Glycine 10 mM (N)
N.D.
N.D.
N.D.
+0.1
-0.6
stress
7H9 with Pretomanid 0.213 ug/mL
N.D.
N.D.
N.D.
+0.1
-0.5
stress
7H9 with Clofazimine 0.45 ug/mL
N.D.
N.D.
N.D.
+0.1
-0.4
nitrogen source
L-Serine 10 mM (N)
N.D.
N.D.
N.D.
+0.2
-0.5
carbon source
D-Lactate 10 mM (C)
N.D.
N.D.
N.D.
-0.2
+0.4
carbon source
L-Glutamine (C)
N.D.
N.D.
N.D.
-0.2
+0.4
carbon source
pyruvate (C)
N.D.
N.D.
N.D.
-0.1
+0.5
carbon source
pyruvate (C)
N.D.
N.D.
N.D.
-0.0
+0.5
carbon source
casaminos 1 mg/mL (C)
N.D.
N.D.
N.D.
-0.1
+0.6
carbon source
L-Glutamine (C)
N.D.
N.D.
N.D.
-0.1
+0.6
no stress control
no stress control
N.D.
N.D.
N.D.
+0.0
+0.5
no stress control
no stress control
N.D.
N.D.
N.D.
+0.2
+0.4
stress
7H9 with Ofloxacin 0.8 ug/mL
N.D.
N.D.
N.D.
+0.0
+0.5
stress
7H9 with Isoniazid 0.025 ug/mL
N.D.
N.D.
N.D.
+0.4
+0.2
stress
7H9 with Ethionamide 0.1 ug/mL
N.D.
N.D.
N.D.
+0.4
+0.3
stress
7H9 with Levofloxacin 0.3 ug/mL
N.D.
N.D.
N.D.
+0.1
+0.6
carbon source
D,L-Malic Acid 10 mM (C)
N.D.
N.D.
N.D.
-0.1
+1.0
stress
7H9 with Isoniazid 0.025 ug/mL
N.D.
N.D.
N.D.
+0.6
+0.4
carbon source
casaminos 1 mg/mL (C)
N.D.
N.D.
N.D.
-0.1
+1.1
carbon source
D,L-Malic Acid 10 mM (C)
N.D.
N.D.
N.D.
-0.0
+1.1
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
-0.3
+1.4
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
-0.3
+1.5
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