Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS13215 and RS_RS13220 are separated by 15 nucleotidesRS_RS13220 and RS_RS25585 are separated by 32 nucleotidesRS_RS25585 and RS_RS13225 are separated by 47 nucleotidesRS_RS13225 and RS_RS13230 are separated by 13 nucleotides RS_RS13215: RS_RS13215 - thioredoxin, at 2,840,996 to 2,841,418 _RS13215 RS_RS13220: RS_RS13220 - nucleotide exchange factor GrpE, at 2,841,434 to 2,842,078 _RS13220 RS_RS25585: RS_RS25585 - transposase, at 2,842,111 to 2,842,314 _RS25585 RS_RS13225: RS_RS13225 - hypothetical protein, at 2,842,362 to 2,842,550 _RS13225 RS_RS13230: RS_RS13230 - RNA-binding S4 domain-containing protein, at 2,842,564 to 2,842,959 _RS13230
Group Condition RS_RS13215 RS_RS13220 RS_RS25585 RS_RS13225 RS_RS13230
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. N.D. +0.8 -1.0 -1.8
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. N.D. +0.2 -1.5 -0.7
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. N.D. -0.1 -1.6 +0.0
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. N.D. +0.1 -0.1 -1.6
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. N.D. +0.1 -1.4 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol N.D. N.D. -0.4 -1.1 +0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin N.D. N.D. -0.1 -1.2 -0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. N.D. +0.0 -1.3 +0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days N.D. N.D. -0.1 -1.1 +0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days N.D. N.D. +0.1 -1.2 +0.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. N.D. +0.6 -0.5 -0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. N.D. -0.0 -1.1 +0.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. N.D. +0.1 +0.3 -1.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. N.D. +0.3 +0.5 -1.5
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi N.D. N.D. +0.5 -1.0 +0.0
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. N.D. +0.3 +0.7 -1.3
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. -0.0 +0.8 -0.7
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. N.D. +0.4 -0.7 +0.5
carbon source Sucrose (C) N.D. N.D. +0.8 -0.6 +0.1
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. +0.9 +0.3 -0.5
carbon source pyruvate (C) N.D. N.D. +0.6 +0.6 -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet N.D. N.D. -0.0 +1.3 -0.3
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. +0.4 +0.9 +0.1
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. +0.4 +0.3 +0.7
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. +0.1 +1.0 +0.4
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. -0.3 +1.5 +0.3
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi N.D. N.D. -0.3 +2.9 -0.1
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. +0.4 +2.5 +0.0
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. +1.7 +1.6 -0.1
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. +1.1 +2.5 +0.2
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