Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS22725 and RS_RS22730 are separated by 135 nucleotidesRS_RS22730 and RS_RS22735 overlap by 17 nucleotidesRS_RS22735 and RS_RS22740 are separated by 53 nucleotidesRS_RS22740 and RS_RS22745 are separated by 132 nucleotides RS_RS22725: RS_RS22725 - lipoprotein signal peptidase, at 1,460,232 to 1,460,759 _RS22725 RS_RS22730: RS_RS22730 - DNA-binding response regulator, at 1,460,895 to 1,461,554 _RS22730 RS_RS22735: RS_RS22735 - two-component sensor histidine kinase, at 1,461,538 to 1,463,076 _RS22735 RS_RS22740: RS_RS22740 - hypothetical protein, at 1,463,130 to 1,463,393 _RS22740 RS_RS22745: RS_RS22745 - TetR/AcrR family transcriptional regulator, at 1,463,526 to 1,464,227 _RS22745
Group Condition RS_RS22725 RS_RS22730 RS_RS22735 RS_RS22740 RS_RS22745
carbon source pyruvate (C) -0.5 -0.2 +0.3 -1.6 -1.8
carbon source D-Glucose (C) -0.5 -0.1 +0.4 -1.5 -1.3
carbon source L-Aspartic Acid (C) -0.1 -0.2 +0.5 -1.4 -1.5
carbon source D-Galactose (C) +0.1 -0.0 +0.0 -1.4 -1.3
carbon source L-Glutamine (C) -1.0 -0.4 +0.4 -0.9 -0.4
carbon source L-Alanine (C) -0.3 -0.9 -0.5 +0.1 -0.7
carbon source D-Glucose (C) -0.4 -0.1 -0.1 -0.1 -1.4
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 -0.9 -0.5 -0.8 -0.2
carbon source L-Glutamine (C) -0.1 -0.3 -0.4 -0.1 -0.8
carbon source L-Glutamic (C) -0.7 +0.1 +0.1 -0.3 -0.7
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 -0.4 -0.3 -0.5 -0.6
carbon source L-Aspartic Acid (C) -0.2 +0.1 -0.4 +0.2 -0.9
carbon source D,L-Malic Acid (C) -0.0 -0.1 +0.6 -0.5 -1.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.5 -0.2 -0.3 +0.3 -0.4
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 -0.3 +0.5 -0.1 -1.0
carbon source pyruvate (C) +0.4 -0.3 +0.3 -0.6 -0.7
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.7 -0.2 +0.1 -0.4 +0.4
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.3 -0.2 -0.1 +0.5 -0.6
carbon source succinate (C) -0.2 -0.0 +0.8 -0.2 -0.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.0 -0.3 +0.1 +0.8 -0.6
carbon source D-Glucose (C) +0.6 -0.1 +0.3 -0.2 -0.5
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi +0.6 -0.7 +0.2 -0.1 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 -0.4 +0.4 +0.4 -0.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.1 -0.2 +0.0 +0.9 -0.4
carbon source succinate (C) +0.9 -0.3 +0.3 -0.0 -0.2
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 +1.3 +0.1 +0.2 -0.5
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 +0.7 +0.3 +0.4 -0.3
carbon source L-Glutamic (C) +0.6 -0.1 +1.0 +0.2 -0.4
carbon source L-Alanine (C) +0.5 +0.1 +0.8 +0.1 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.9 +0.4 +0.1 +0.3 +0.0
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